ФЭНДОМ


   LOCUS       NC_002570            4202352 bp    DNA     circular BCT 03-DEC-2005
   DEFINITION  Bacillus halodurans C-125, complete genome.
   ACCESSION   NC_002570
   VERSION     NC_002570.2  GI:57596592
   KEYWORDS    .
   SOURCE      Bacillus halodurans C-125
     ORGANISM  Bacillus halodurans C-125
               Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus.
   REFERENCE   1  (bases 1 to 4202352)
     AUTHORS   Takami,H., Nakasone,K., Takaki,Y., Maeno,G., Sasaki,R., Masui,N.,
               Fuji,F., Hirama,C., Nakamura,Y., Ogasawara,N., Kuhara,S. and
               Horikoshi,K.
     TITLE     Complete genome sequence of the alkaliphilic bacterium Bacillus
               halodurans and genomic sequence comparison with Bacillus subtilis
     JOURNAL   Nucleic Acids Res. 28 (21), 4317-4331 (2000)
      PUBMED   11058132
   REFERENCE   2  (bases 1 to 4202352)
     AUTHORS   Nakasone,K., Masui,N., Takaki,Y., Sasaki,R., Maeno,G., Sakiyama,T.,
               Hirama,C., Fuji,F. and Takami,H.
     TITLE     Characterization and comparative study of the rrn operons of
               alkaliphilic Bacillus halodurans C-125
     JOURNAL   Extremophiles 4 (4), 209-214 (2000)
      PUBMED   10972189
   REFERENCE   3  (sites)
     AUTHORS   Takami,H. and Horikoshi,K.
     TITLE     Analysis of the genome of an alkaliphilic Bacillus strain from an
               industrial point of view
     JOURNAL   Extremophiles 4 (2), 99-108 (2000)
      PUBMED   10805564
   REFERENCE   4  (sites)
     AUTHORS   Takami,H., Takaki,Y., Nakasone,K., Sakiyama,T., Maeno,G.,
               Sasaki,R., Hirama,C., Fuji,F. and Masui,N.
     TITLE     Genetic analysis of the chromosome of alkaliphilic Bacillus
               halodurans C-125
     JOURNAL   Extremophiles 3 (3), 227-233 (1999)
      PUBMED   10484179
   REFERENCE   5  (sites)
     AUTHORS   Takami,H., Masui,N., Nakasone,K. and Horikoshi,K.
     TITLE     Replication origin region of the chromosome of alkaliphilic
               Bacillus halodurans C-125
     JOURNAL   Biosci. Biotechnol. Biochem. 63 (6), 1134-1137 (1999)
      PUBMED   10427704
   REFERENCE   6  (sites)
     AUTHORS   Takami,H., Takaki,Y., Nakasone,K., Hirama,C., Inoue,A. and
               Horikoshi,K.
     TITLE     Sequence analysis of a 32-kb region including the major ribosomal
               protein gene clusters from alkaliphilic Bacillus sp. strain C-125
     JOURNAL   Biosci. Biotechnol. Biochem. 63 (2), 452-455 (1999)
      PUBMED   10192928
   REFERENCE   7  (sites)
     AUTHORS   Takami,H., Nakasone,K., Ogasawara,N., Hirama,C., Nakamura,Y.,
               Masui,N., Fuji,F., Takaki,Y., Inoue,A. and Horikoshi,K.
     TITLE     Sequencing of three lambda clones from the genome of alkaliphilic
               Bacillus sp. strain C-125
     JOURNAL   Extremophiles 3 (1), 29-34 (1999)
      PUBMED   10086842
   REFERENCE   8  (sites)
     AUTHORS   Takami,H., Nakasone,K., Hirama,C., Takaki,Y., Masui,N., Fuji,F.,
               Nakamura,Y. and Inoue,A.
     TITLE     An improved physical and genetic map of the genome of alkaliphilic
               Bacillus sp. C-125
     JOURNAL   Extremophiles 3 (1), 21-28 (1999)
      PUBMED   10086841
   REFERENCE   9  (sites)
     AUTHORS   Takami,H.
     TITLE     Genome analysis of facultatively alkalihilic Bacillus halodurans
               C-125
     JOURNAL   (in) Extremophiles in deep-sea environments (Ed.);
               . HORIKOSHI, K. TSUJII;
               : 249-284; Springer-Verlag (1999)
   REFERENCE   10 (sites)
     AUTHORS   Takami,H. and Horikoshi,K.
     TITLE     Reidentification of facultatively alkaliphilic Bacillus sp. C-125
               to Bacillus halodurans
     JOURNAL   Biosci. Biotechnol. Biochem. 63, 943-945 (1999)
   REFERENCE   11 (bases 1 to 4202352)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (13-SEP-2001) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   12 (bases 1 to 4202352)
     CONSRTM   NCBI Microbial Genomes Annotation Project
     TITLE     Direct Submission
     JOURNAL   Submitted (25-JUN-2001) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   13 (bases 1 to 4202352)
     AUTHORS   Takami,H. and Takaki,Y.
     TITLE     Direct Submission
     JOURNAL   Submitted (22-MAR-2000) Japan Marine Science and Technology Center,
               Deep-sea Microorganisms Research Group, 2-15 Natsushima, Yokosuka,
               Kanagawa 237-0061, Japan
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from BA000004.
               On Jan 12, 2005 this sequence version replaced gi:15612563.
               COMPLETENESS: full length.


Расположение РНК Править

Начало Конец Направление Длина PID Ген COG Комментарий
22819 24370 + 1552 57596592 BHr001 - 16S ribosomal RNA
25054 27992 + 2939 57596592 BHr002 - 23S ribosomal RNA
28401 28516 + 116 57596592 BHr003 - 5S ribosomal RNA
45480 45572 + 93 57596592 BHt001 - 08</sub> Ser tRNA
50588 52139 + 1552 57596592 BHr004 - 16S ribosomal RNA
52991 55929 + 2939 57596592 BHr005 - 23S ribosomal RNA
56235 56350 + 116 57596592 BHr006 - 5S ribosomal RNA
94883 94956 + 74 57596592 BHt002 - 16</sub> Met tRNA
117374 118925 + 1552 57596592 BHr007 - 16S ribosomal RNA
119378 119454 + 77 57596592 BHt003 - 14</sub> Ile tRNA
119466 119541 + 76 57596592 BHt004 - 02</sub> Ala tRNA
119924 122862 + 2939 57596592 BHr008 - 23S ribosomal RNA
123273 123388 + 116 57596592 BHr009 - 5S ribosomal RNA
123398 123473 + 76 57596592 BHt005 - 13</sub> Val tRNA
123515 123587 + 73 57596592 BHt006 - 12</sub> Thr tRNA
123595 123670 + 76 57596592 BHt007 - 10</sub> Lys tRNA
123679 123764 + 86 57596592 BHt008 - 15</sub> Leu tRNA
123771 123845 + 75 57596592 BHt009 - 01</sub> Gly tRNA
123869 123957 + 89 57596592 BHt010 - 15</sub> Leu tRNA
123973 124049 + 77 57596592 BHt011 - 11</sub> Arg tRNA
124055 124131 + 77 57596592 BHt012 - 03</sub> Pro tRNA
124135 124210 + 76 57596592 BHt013 - 02</sub> Ala tRNA
124393 125945 + 1553 57596592 BHr010 - 16S ribosomal RNA
126753 129691 + 2939 57596592 BHr011 - 23S ribosomal RNA
129997 130112 + 116 57596592 BHr012 - 5S ribosomal RNA
261929 263480 + 1552 57596592 BHr013 - 16S ribosomal RNA
264163 267101 + 2939 57596592 BHr014 - 23S ribosomal RNA
267406 267521 + 116 57596592 BHr015 - 5S ribosomal RNA
267531 267605 + 75 57596592 BHt014 - 07</sub> Asn tRNA
267613 267685 + 73 57596592 BHt015 - 12</sub> Thr tRNA
282063 282137 + 75 57596592 BHt016 - 04</sub> Glu tRNA
282231 282306 + 76 57596592 BHt017 - 13</sub> Val tRNA
282562 282634 + 73 57596592 BHt018 - 12</sub> Thr tRNA
282656 282740 + 85 57596592 BHt019 - 18</sub> Tyr tRNA
282749 282823 + 75 57596592 BHt020 - 05</sub> Gln tRNA
282887 282962 + 76 57596592 BHt021 - 10</sub> Lys tRNA
282970 283044 + 75 57596592 BHt022 - 01</sub> Gly tRNA
283049 283124 + 76 57596592 BHt023 - 02</sub> Ala tRNA
558019 558093 + 75 57596592 BHt024 - 07</sub> Asn tRNA
558096 558186 + 91 57596592 BHt025 - 08</sub> Ser tRNA
558197 558271 + 75 57596592 BHt026 - 04</sub> Glu tRNA
558305 558380 + 76 57596592 BHt027 - 13</sub> Val tRNA
558388 558464 + 77 57596592 BHt028 - 06</sub> Asp tRNA
558492 558574 + 83 57596592 BHt029 - 15</sub> Leu tRNA
558590 558673 + 84 57596592 BHt030 - 15</sub> Leu tRNA
558683 558759 + 77 57596592 BHt031 - 11</sub> Arg tRNA
558780 558856 + 77 57596592 BHt032 - 03</sub> Pro tRNA
558863 558936 + 74 57596592 BHt033 - 01</sub> Gly tRNA
558976 559052 + 77 57596592 BHt034 - 14</sub> Ile tRNA
559243 560794 + 1552 57596592 BHr016 - 16S ribosomal RNA
561522 564460 + 2939 57596592 BHr017 - 23S ribosomal RNA
564869 564984 + 116 57596592 BHr018 - 5S ribosomal RNA
577146 577261 + 116 57596592 BHr019 - 5S ribosomal RNA
577380 577453 + 74 57596592 BHt035 - 16</sub> Met tRNA
656197 657748 + 1552 57596592 BHr020 - 16S ribosomal RNA
658205 658281 + 77 57596592 BHt036 - 14</sub> Ile tRNA
658293 658368 + 76 57596592 BHt037 - 02</sub> Ala tRNA
658720 661658 + 2939 57596592 BHr021 - 23S ribosomal RNA
662067 662182 + 116 57596592 BHr022 - 5S ribosomal RNA
1017921 1019473 + 1553 57596592 BHr023 - 16S ribosomal RNA
1020325 1023263 + 2939 57596592 BHr024 - 23S ribosomal RNA
1023672 1023787 + 116 57596592 BHr025 - 5S ribosomal RNA
1023797 1023871 + 75 57596592 BHt038 - 07</sub> Asn tRNA
1023873 1023966 + 94 57596592 BHt039 - 08</sub> Ser tRNA
1023980 1024051 + 72 57596592 BHt040 - 04</sub> Glu tRNA
1024086 1024161 + 76 57596592 BHt041 - 13</sub> Val tRNA
1024337 1024413 + 77 57596592 BHt042 - 16</sub> Met tRNA
1024418 1024494 + 77 57596592 BHt043 - 06</sub> Asp tRNA
1024505 1024580 + 76 57596592 BHt044 - 17</sub> Phe tRNA
1024586 1024661 + 76 57596592 BHt045 - 12</sub> Thr tRNA
1024716 1024800 + 85 57596592 BHt046 - 18</sub> Tyr tRNA
1024812 1024885 + 74 57596592 BHt047 - 20</sub> Trp tRNA
1024904 1024979 + 76 57596592 BHt048 - 09</sub> His tRNA
1024993 1025067 + 75 57596592 BHt049 - 05</sub> Gln tRNA
1025072 1025146 + 75 57596592 BHt050 - 01</sub> Gly tRNA
1025154 1025224 + 71 57596592 BHt051 - 19</sub> Cys tRNA
1025251 1025339 + 89 57596592 BHt052 - 15</sub> Leu tRNA
1025355 1025431 + 77 57596592 BHt053 - 11</sub> Arg tRNA
1039353 1039438 + 86 57596592 BHt054 - 15</sub> Leu tRNA
1491438 1491512 + 75 57596592 BHt055 - 07</sub> Asn tRNA
1491519 1491592 + 74 57596592 BHt056 - 16</sub> Met tRNA
1491644 1491720 + 77 57596592 BHt057 - 16</sub> Met tRNA
1491735 1491827 + 93 57596592 BHt058 - 08</sub> Ser tRNA
2860216 2860288 - 73 57596592 BHt059 - 13</sub> Val tRNA
2876632 2876706 - 75 57596592 BHt060 - 11</sub> Arg tRNA
2948437 2948507 - 71 57596592 BHt061 - 01</sub> Gly tRNA
2948693 2948769 - 77 57596592 BHt062 - 11</sub> Arg tRNA
2948771 2948845 - 75 57596592 BHt063 - 01</sub> Gly tRNA
2948850 2948924 - 75 57596592 BHt064 - 05</sub> Gln tRNA
2948940 2949015 - 76 57596592 BHt065 - 09</sub> His tRNA
2949028 2949112 - 85 57596592 BHt066 - 18</sub> Tyr tRNA
2949118 2949194 - 77 57596592 BHt067 - 16</sub> Met tRNA
2949366 2949458 - 93 57596592 BHt068 - 08</sub> Ser tRNA
2949476 2949551 - 76 57596592 BHt069 - 02</sub> Ala tRNA
2952402 2952473 + 72 57596592 BHt070 - 05</sub> Gln tRNA
3188039 3188115 - 77 57596592 BHt071 - 11</sub> Arg tRNA
3188120 3188193 - 74 57596592 BHt072 - 01</sub> Gly tRNA
3457775 3457850 - 76 57596592 BHt073 - 02</sub> Ala tRNA
3617681 3618103 - 423 57596592 BHs001 - RNA component of ribonuclease P
3652245 3652598 - 354 57596592 BHs002 - small stable 10Sa RNA
4163186 4163258 - 73 57596592 BHt074 - 12</sub> Thr tRNA
4163644 4163719 - 76 57596592 BHt075 - 17</sub> Phe tRNA
4163729 4163805 - 77 57596592 BHt076 - 06</sub> Asp tRNA
4163816 4163890 - 75 57596592 BHt077 - 04</sub> Glu tRNA
4163900 4163975 - 76 57596592 BHt078 - 10</sub> Lys tRNA