ФЭНДОМ


   LOCUS       NC_005957            5237682 bp    DNA     circular BCT 22-JUN-2007
   DEFINITION  Bacillus thuringiensis serovar konkukian str. 97-27, complete
               genome.
   ACCESSION   NC_005957
   VERSION     NC_005957.1  GI:49476684
   KEYWORDS    .
   SOURCE      Bacillus thuringiensis serovar konkukian str. 97-27
     ORGANISM  Bacillus thuringiensis serovar konkukian str. 97-27
               Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus
               cereus group.
   REFERENCE   1  (bases 1 to 5237682)
     AUTHORS   Han,C.S., Xie,G., Challacombe,J.F., Altherr,M.R., Bhotika,S.S.,
               Brown,N., Bruce,D., Campbell,C.S., Campbell,M.L., Chen,J.,
               Chertkov,O., Cleland,C., Dimitrijevic,M., Doggett,N.A.,
               Fawcett,J.J., Glavina,T., Goodwin,L.A., Green,L.D., Hill,K.K.,
               Hitchcock,P., Jackson,P.J., Keim,P., Kewalramani,A.R., Longmire,J.,
               Lucas,S., Malfatti,S., McMurry,K., Meincke,L.J., Misra,M.,
               Moseman,B.L., Mundt,M., Munk,A.C., Okinaka,R.T.,
               Parson-Quintana,B., Reilly,L.P., Richardson,P., Robinson,D.L.,
               Rubin,E., Saunders,E., Tapia,R., Tesmer,J.G., Thayer,N.,
               Thompson,L.S., Tice,H., Ticknor,L.O., Wills,P.L., Brettin,T.S. and
               Gilna,P.
     TITLE     Pathogenomic sequence analysis of Bacillus cereus and Bacillus
               thuringiensis isolates closely related to Bacillus anthracis
     JOURNAL   J. Bacteriol. 188 (9), 3382-3390 (2006)
      PUBMED   16621833
     REMARK    Erratum:[J Bacteriol. 2006 Nov;188(21):7711. Brown, Nancy [added];
               Green, Lance D [added]]
   REFERENCE   2  (bases 1 to 5237682)
     AUTHORS   Brettin,T.S., Bruce,D., Challacombe,J.F., Gilna,P., Han,C.,
               Hill,K., Hitchcock,P., Jackson,P., Keim,P., Longmire,J., Lucas,S.,
               Okinaka,R., Richardson,P., Rubin,E. and Tice,H.
     TITLE     Complete genome sequence of Bacillus thuringiensis 97-27
     JOURNAL   Unpublished
   REFERENCE   3  (bases 1 to 5237682)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (11-SEP-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   4  (bases 1 to 5237682)
     AUTHORS   Brettin,T.S., Bruce,D., Challacombe,J.F., Gilna,P., Han,C.,
               Hill,K., Hitchcock,P., Jackson,P., Keim,P., Longmire,J., Lucas,S.,
               Okinaka,R., Richardson,P., Rubin,E. and Tice,H.
     TITLE     Direct Submission
     JOURNAL   Submitted (07-JUN-2004) Joint Genome Institute, Department of
               Energy, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AE017355.
               Bacillus thuringiensis 97-27 (subsp. konkukian (serotype H34)) was
               originally isolated from a case of severe human tissue necrosis
               (Bacillus thuringiensis subsp. konkukian (serotype H34)
               superinfection: Case report and experimental evidence of
               pathogenicity in immunosupporessed mice. Hernandez, E, Ramisse, F,
               Ducoureau, J-P, Cruel, T, and Cavallo, J-D. J Clin Microbiol 1998
               36(7):2138-2139). B. thuringiensis is indigenous to many habitats
               worldwide; these include soil, insects, deciduous and coniferous
               leaves (Prediction of insecticidal activity of Bacillus
               thuringiensis strains by polymerase chain reaction product
               profiles. Carozzi, NB, Kramer, VC, Warren, GW, Evola, S, and
               Koziel, MG. Appl Environ Microbiol. 1991 57(11):3057-61). B.
               thuringiensis is an insect pathogen that is widely used as a
               biopesticide in commercial agriculture. Infection of humans is
               unusual. The apparent pathogenic properties of B. thuringiensis
               97-27 are very unusual for B. thuringiensis; unlike most B.
               thuringiensis isolates, this isolate is very closely related to B.
               anthracis based on phylogenetic analysis (Fluorescent amplified
               fragment length polymorphism analysis of Bacillus anthracis,
               Bacillus cereus, and Bacillus thuringiensis isolates. Hill, KK,
               Ticknor, LO, Okinaka, RT, Asay, M, Blair, H, Bliss, KA, Laker, M,
               Pardington, PE, Richardson, AP, Tonks, M, Beecher, DJ, Kemp, JD,
               Kolsto, A-B, Wong, ACL, Keim, P, and Jackson, PJ. Appl Environ
               Microbiol 70(2):1068-1080. Plasmid and fosmid libraries were
               prepared at the Joint Genome Institute in Los Alamos (JGI-LANL),
               NM. Shotgun sequencing was performed at the JGI Production Genomics
               Facility (JGI-PGF) in Walnut Creek, CA to a coverage of 24x.
               Finishing was performed at JGI-LANL starting with 83 contigs and 16
               scaffolds. Repetitive regions were identified, assembled and
               finished by manually checking paired reads close to each repeat in
               the assembly with consed and then making a subassembly for each
               repetitive region. Fifty five gaps were closed with primer walks
               and 16 by PCR.Gene predictions were obtained using Glimmer and
               tRNAs were identified using tRNAScan-SE. Basic analysis of the gene
               predictions was performed by comparing coding sequences against the
               PFam, BLOCKS and Prodom databases. Gene definitions and functional
               classes were added manually by a team of annotators at JGI-LANL,
               using BLAST results in addition to information from the basic
               analysis. A total of 5540 features have been annotated on the
               sequence record.
               COMPLETENESS: full length.


Расположение РНК Править

Начало Конец Направление Длина PID Ген COG Комментарий
9337 10846 + 1510 49476684 rRNA-16SrRNA_1 - 16S ribosomal RNA
10994 11073 + 80 49476684 tRNA-Ile-2 - 14</sub> Ile tRNA
11079 11157 + 79 49476684 tRNA-Ala-5 - 02</sub> Ala tRNA
11249 14160 + 2912 49476684 rRNA-23SrRNA_1 - 23S ribosomal RNA
14209 14326 + 118 49476684 rRNA-5SrRNA_1 - 5S ribosomal RNA
21776 21871 + 96 49476684 tRNA-Ser-5 - 08</sub> Ser tRNA
29138 30647 + 1510 49476684 rRNA-16SrRNA_2 - 16S ribosomal RNA
30795 30874 + 80 49476684 tRNA-Ile-4 - 14</sub> Ile tRNA
30880 30958 + 79 49476684 tRNA-Ala-1 - 02</sub> Ala tRNA
31050 33960 + 2911 49476684 rRNA-23SrRNA_2 - 23S ribosomal RNA
34009 34126 + 118 49476684 rRNA-5SrRNA_2 - 5S ribosomal RNA
64440 64516 + 77 49476684 tRNA-Met-1 - 16</sub> Met tRNA
64527 64601 + 75 49476684 tRNA-Glu-7 - 04</sub> Glu tRNA
82466 83975 + 1510 49476684 rRNA-16SrRNA_3 - 16S ribosomal RNA
84151 87061 + 2911 49476684 rRNA-23SrRNA_3 - 23S ribosomal RNA
87162 87275 + 114 49476684 rRNA-5SrRNA_3 - 5S ribosomal RNA
87281 87359 + 79 49476684 tRNA-Val-5 - 13</sub> Val tRNA
87361 87439 + 79 49476684 tRNA-Thr-1 - 12</sub> Thr tRNA
87450 87528 + 79 49476684 tRNA-Lys-4 - 10</sub> Lys tRNA
87541 87624 + 84 49476684 tRNA-Leu-8 - 15</sub> Leu tRNA
87651 87728 + 78 49476684 tRNA-Gly-2 - 01</sub> Gly tRNA
87742 87833 + 92 49476684 tRNA-Leu-6 - 15</sub> Leu tRNA
87834 87910 + 77 49476684 tRNA-Arg-5 - 11</sub> Arg tRNA
87916 87992 + 77 49476684 tRNA-Pro-2 - 03</sub> Pro tRNA
87999 88077 + 79 49476684 tRNA-Ala-3 - 02</sub> Ala tRNA
88179 89688 + 1510 49476684 rRNA-16SrRNA_4 - 16S ribosomal RNA
89864 92774 + 2911 49476684 rRNA-23SrRNA_4 - 23S ribosomal RNA
92822 92939 + 118 49476684 rRNA-5SrRNA_4 - 5S ribosomal RNA
151247 152755 + 1509 49476684 rRNA-16SrRNA_5 - 16S ribosomal RNA
152931 155841 + 2911 49476684 rRNA-23SrRNA_5 - 23S ribosomal RNA
155927 156040 + 114 49476684 rRNA-5SrRNA_5 - 5S ribosomal RNA
156050 156127 + 78 49476684 tRNA-Asn-3 - 07</sub> Asn tRNA
156129 156204 + 76 49476684 tRNA-Thr-3 - 12</sub> Thr tRNA
156226 156303 + 78 49476684 tRNA-Glu-4 - 04</sub> Glu tRNA
156306 156384 + 79 49476684 tRNA-Val-6 - 13</sub> Val tRNA
156399 156485 + 87 49476684 tRNA-Tyr-2 - 18</sub> Tyr tRNA
156548 156625 + 78 49476684 tRNA-Gln-4 - 05</sub> Gln tRNA
156628 156706 + 79 49476684 tRNA-Lys-1 - 10</sub> Lys tRNA
156709 156783 + 75 49476684 tRNA-Gly-6 - 01</sub> Gly tRNA
156791 156866 + 76 49476684 tRNA-Ala-2 - 02</sub> Ala tRNA
251006 251083 + 78 49476684 tRNA-Asn-1 - 07</sub> Asn tRNA
251084 251177 + 94 49476684 tRNA-Ser-2 - 08</sub> Ser tRNA
251183 251260 + 78 49476684 tRNA-Glu-1 - 04</sub> Glu tRNA
251262 251340 + 79 49476684 tRNA-Val-3 - 13</sub> Val tRNA
251384 251462 + 79 49476684 tRNA-Asp-4 - 06</sub> Asp tRNA
251547 251624 + 78 49476684 tRNA-Gln-3 - 05</sub> Gln tRNA
251627 251702 + 76 49476684 tRNA-Lys-5 - 10</sub> Lys tRNA
251716 251804 + 89 49476684 tRNA-Leu-5 - 15</sub> Leu tRNA
251897 251976 + 80 49476684 tRNA-Arg-3 - 11</sub> Arg tRNA
251978 252057 + 80 49476684 tRNA-Pro-4 - 03</sub> Pro tRNA
252056 252129 + 74 49476684 tRNA-Gly-3 - 01</sub> Gly tRNA
252230 253739 + 1510 49476684 rRNA-16SrRNA_6 - 16S ribosomal RNA
253915 256825 + 2911 49476684 rRNA-23SrRNA_6 - 23S ribosomal RNA
256874 256991 + 118 49476684 rRNA-5SrRNA_6 - 5S ribosomal RNA
257001 257080 + 80 49476684 tRNA-Met-4 - 16</sub> Met tRNA
257081 257159 + 79 49476684 tRNA-Asp-1 - 06</sub> Asp tRNA
272749 274258 + 1510 49476684 rRNA-16SrRNA_7 - 16S ribosomal RNA
274434 277344 + 2911 49476684 rRNA-23SrRNA_7 - 23S ribosomal RNA
277392 277509 + 118 49476684 rRNA-5SrRNA_7 - 5S ribosomal RNA
279760 281269 + 1510 49476684 rRNA-16SrRNA_8 - 16S ribosomal RNA
281445 284355 + 2911 49476684 rRNA-23SrRNA_8 - 23S ribosomal RNA
284402 284519 + 118 49476684 rRNA-5SrRNA_8 - 5S ribosomal RNA
287106 288614 + 1509 49476684 rRNA-16SrRNA_9 - 16S ribosomal RNA
291748 291865 + 118 49476684 rRNA-5SrRNA_9 - 5S ribosomal RNA
297075 298584 + 1510 49476684 rRNA-16SrRNA_10 - 16S ribosomal RNA
298760 301671 + 2912 49476684 rRNA-23SrRNA_9 - 23S ribosomal RNA
301718 301836 + 119 49476684 BT9727_r02 - 5S ribosomal RNA
304222 305776 + 1555 49476684 BT9727_r01 - 16S ribosomal RNA
305935 308846 + 2912 49476684 rRNA-23SrRNA_10 - 23S ribosomal RNA
308895 309012 + 118 49476684 rRNA-5SrRNA_10 - 5S ribosomal RNA
521476 522985 + 1510 49476684 rRNA-16SrRNA_11 - 16S ribosomal RNA
523160 526070 + 2911 49476684 rRNA-23SrRNA_11 - 23S ribosomal RNA
526171 526284 + 114 49476684 rRNA-5SrRNA_11 - 5S ribosomal RNA
526293 526370 + 78 49476684 tRNA-Asn-4 - 07</sub> Asn tRNA
526370 526464 + 95 49476684 tRNA-Ser-3 - 08</sub> Ser tRNA
526479 526556 + 78 49476684 tRNA-Glu-3 - 04</sub> Glu tRNA
526559 526637 + 79 49476684 tRNA-Val-4 - 13</sub> Val tRNA
526659 526738 + 80 49476684 tRNA-Met-3 - 16</sub> Met tRNA
526739 526817 + 79 49476684 tRNA-Asp-5 - 06</sub> Asp tRNA
526824 526902 + 79 49476684 tRNA-Phe-2 - 17</sub> Phe tRNA
526918 526996 + 79 49476684 tRNA-Thr-5 - 12</sub> Thr tRNA
527004 527090 + 87 49476684 tRNA-Tyr-1 - 18</sub> Tyr tRNA
527095 527171 + 77 49476684 tRNA-Trp-2 - 20</sub> Trp tRNA
527188 527266 + 79 49476684 tRNA-His-1 - 09</sub> His tRNA
527327 527404 + 78 49476684 tRNA-Gln-2 - 05</sub> Gln tRNA
527407 527484 + 78 49476684 tRNA-Gly-9 - 01</sub> Gly tRNA
527496 527569 + 74 49476684 tRNA-Cys-1 - 19</sub> Cys tRNA
527577 527664 + 88 49476684 tRNA-Leu-2 - 15</sub> Leu tRNA
532092 532168 + 77 49476684 tRNA-Gly-8 - 01</sub> Gly tRNA
732426 733935 + 1510 49476684 rRNA-16SrRNA_12 - 16S ribosomal RNA
734110 737020 + 2911 49476684 rRNA-23SrRNA_12 - 23S ribosomal RNA
737121 737234 + 114 49476684 rRNA-5SrRNA_12 - 5S ribosomal RNA
737240 737318 + 79 49476684 tRNA-Val-7 - 13</sub> Val tRNA
737324 737410 + 87 49476684 tRNA-Tyr-3 - 18</sub> Tyr tRNA
737419 737496 + 78 49476684 tRNA-Gln-1 - 05</sub> Gln tRNA
737498 737576 + 79 49476684 tRNA-Lys-6 - 10</sub> Lys tRNA
737588 737671 + 84 49476684 tRNA-Leu-1 - 15</sub> Leu tRNA
737698 737775 + 78 49476684 tRNA-Gly-4 - 01</sub> Gly tRNA
737789 737880 + 92 49476684 tRNA-Leu-7 - 15</sub> Leu tRNA
737881 737957 + 77 49476684 tRNA-Arg-1 - 11</sub> Arg tRNA
737965 738041 + 77 49476684 tRNA-Pro-3 - 03</sub> Pro tRNA
738055 738130 + 76 49476684 tRNA-Ala-6 - 02</sub> Ala tRNA
738148 738243 + 96 49476684 tRNA-Ser-6 - 08</sub> Ser tRNA
738296 738391 + 96 49476684 tRNA-Ser-1 - 08</sub> Ser tRNA
738409 738488 + 80 49476684 tRNA-Met-6 - 16</sub> Met tRNA
738490 738568 + 79 49476684 tRNA-Asp-3 - 06</sub> Asp tRNA
738574 738652 + 79 49476684 tRNA-Phe-1 - 17</sub> Phe tRNA
738659 738734 + 76 49476684 tRNA-Thr-6 - 12</sub> Thr tRNA
738738 738811 + 74 49476684 tRNA-Trp-1 - 20</sub> Trp tRNA
738822 738901 + 80 49476684 tRNA-Ile-3 - 14</sub> Ile tRNA
738907 738984 + 78 49476684 tRNA-Asn-5 - 07</sub> Asn tRNA
738983 739057 + 75 49476684 tRNA-Glu-5 - 04</sub> Glu tRNA
969811 969884 + 74 49476684 tRNA-Cys-2 - 19</sub> Cys tRNA
1255195 1255270 - 76 49476684 tRNA-Val-2 - 13</sub> Val tRNA
4082558 4082634 - 77 49476684 tRNA-Met-7 - 16</sub> Met tRNA
4280195 4280271 - 77 49476684 tRNA-Gly-7 - 01</sub> Gly tRNA
4655315 4655389 - 75 49476684 tRNA-Glu-2 - 04</sub> Glu tRNA
4655393 4655486 - 94 49476684 tRNA-Ser-7 - 08</sub> Ser tRNA
4655491 4655568 - 78 49476684 tRNA-Asn-2 - 07</sub> Asn tRNA
4655573 4655652 - 80 49476684 tRNA-Ile-1 - 14</sub> Ile tRNA
4655660 4655733 - 74 49476684 tRNA-Gly-1 - 01</sub> Gly tRNA
4655744 4655822 - 79 49476684 tRNA-Lys-3 - 10</sub> Lys tRNA
4655830 4655908 - 79 49476684 tRNA-Thr-2 - 12</sub> Thr tRNA
4655920 4655998 - 79 49476684 tRNA-Phe-3 - 17</sub> Phe tRNA
4656008 4656086 - 79 49476684 tRNA-Asp-2 - 06</sub> Asp tRNA
4656085 4656164 - 80 49476684 tRNA-Met-5 - 16</sub> Met tRNA
4656189 4656284 - 96 49476684 tRNA-Ser-4 - 08</sub> Ser tRNA
4656299 4656378 - 80 49476684 tRNA-Met-8 - 16</sub> Met tRNA
4656380 4656459 - 80 49476684 tRNA-Met-2 - 16</sub> Met tRNA
4656477 4656552 - 76 49476684 tRNA-Ala-4 - 02</sub> Ala tRNA
4656565 4656641 - 77 49476684 tRNA-Pro-1 - 03</sub> Pro tRNA
4656649 4656725 - 77 49476684 tRNA-Arg-4 - 11</sub> Arg tRNA
4656726 4656817 - 92 49476684 tRNA-Leu-4 - 15</sub> Leu tRNA
4656831 4656908 - 78 49476684 tRNA-Gly-5 - 01</sub> Gly tRNA
4656935 4657018 - 84 49476684 tRNA-Leu-3 - 15</sub> Leu tRNA
4657038 4657116 - 79 49476684 tRNA-His-2 - 09</sub> His tRNA
4657123 4657201 - 79 49476684 tRNA-Thr-4 - 12</sub> Thr tRNA
4657203 4657281 - 79 49476684 tRNA-Val-1 - 13</sub> Val tRNA
4657286 4657399 - 114 49476684 rRNA-5SrRNA_13 - 5S ribosomal RNA
4657500 4660410 - 2911 49476684 rRNA-23SrRNA_13 - 23S ribosomal RNA
4660586 4662095 - 1510 49476684 rRNA-16SrRNA_13 - 16S ribosomal RNA
4873207 4873285 - 79 49476684 tRNA-Arg-2 - 11</sub> Arg tRNA
5217059 5217134 - 76 49476684 tRNA-Phe-4 - 17</sub> Phe tRNA
5217173 5217251 - 79 49476684 tRNA-Asp-6 - 06</sub> Asp tRNA
5217271 5217345 - 75 49476684 tRNA-Glu-6 - 04</sub> Glu tRNA
5217356 5217434 - 79 49476684 tRNA-Lys-2 - 10</sub> Lys tRNA