ФЭНДОМ


   LOCUS       NC_006155            4744671 bp    DNA     circular BCT 26-JUN-2007
   DEFINITION  Yersinia pseudotuberculosis IP 32953, complete genome.
   ACCESSION   NC_006155
   VERSION     NC_006155.1  GI:51594359
   KEYWORDS    complete genome.
   SOURCE      Yersinia pseudotuberculosis IP 32953
     ORGANISM  Yersinia pseudotuberculosis IP 32953
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Yersinia.
   REFERENCE   1  (bases 1 to 4744671)
     AUTHORS   Chain,P.S., Carniel,E., Larimer,F.W., Lamerdin,J., Stoutland,P.O.,
               Regala,W.M., Georgescu,A.M., Vergez,L.M., Land,M.L., Motin,V.L.,
               Brubaker,R.R., Fowler,J., Hinnebusch,J., Marceau,M., Medigue,C.,
               Simonet,M., Chenal-Francisque,V., Souza,B., Dacheux,D.,
               Elliott,J.M., Derbise,A., Hauser,L.J. and Garcia,E.
     TITLE     Insights into the evolution of Yersinia pestis through whole-genome
               comparison with Yersinia pseudotuberculosis
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 101 (38), 13826-13831 (2004)
      PUBMED   15358858
   REFERENCE   2  (bases 1 to 4744671)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (30-AUG-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4744671)
     AUTHORS   Chain,P.S.G., Carniel,E., Garcia,E. and Larimer,F.W.
     TITLE     Direct Submission
     JOURNAL   Submitted (08-FEB-2004) Biology and Biotechnology Research Program,
               Lawrence Livermore National Laboratory, Livermore, CA 94550 USA,
               Yersinia Research Unit, Institute Pasteur, 75724 Paris Cedex 15,
               France, and the Genome Analysis Group, Oak Ridge National
               Laboratory, Oak Ridge, TN 37831 USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from BX936398.
               COMPLETENESS: full length.


Расположение РНК Править

Начало Конец Направление Длина PID Ген COG Комментарий
12249 13794 + 1546 51594359 YPTB_RNA_93 - 16S ribosomal RNA
13928 14003 + 76 51594359 YPTB_RNA_1 - 04</sub> Glu tRNA
14256 17162 + 2907 51594359 YPTB_RNA_94 - 23S ribosomal RNA
17271 17390 + 120 51594359 YPTB_RNA_95 - 5S ribosomal RNA
25940 26047 + 108 51594359 YPTB_RNA_89 - spf Spot 42 RNA
27205 27459 + 255 51594359 YPTB_RNA_113 - regulatory RNA CsrC
147319 147579 + 261 51594359 YPTB_RNA_114 - Cobalamin riboswitch
150806 152351 + 1546 51594359 YPTB_RNA_96 - 16S ribosomal RNA
152485 152560 + 76 51594359 YPTB_RNA_2 - 04</sub> Glu tRNA
152813 155719 + 2907 51594359 YPTB_RNA_97 - 23S ribosomal RNA
155828 155947 + 120 51594359 YPTB_RNA_98 - 5S ribosomal RNA
156071 156147 + 77 51594359 YPTB_RNA_3 - 06</sub> Asp tRNA
156156 156231 + 76 51594359 YPTB_RNA_4 - 20</sub> Trp tRNA
216856 216932 + 77 51594359 YPTB_RNA_5 - 11</sub> Arg tRNA
217016 217091 + 76 51594359 YPTB_RNA_6 - 09</sub> His tRNA
217108 217194 + 87 51594359 YPTB_RNA_7 - 15</sub> Leu tRNA
217270 217346 + 77 51594359 YPTB_RNA_8 - 03</sub> Pro tRNA
320424 321970 + 1547 51594359 YPTB_RNA_99 - 16S ribosomal RNA
322070 322146 + 77 51594359 YPTB_RNA_9 - 14</sub> Ile tRNA
322198 322273 + 76 51594359 YPTB_RNA_10 - 02</sub> Ala tRNA
322492 325399 + 2908 51594359 YPTB_RNA_100 - 23S ribosomal RNA
325508 325627 + 120 51594359 YPTB_RNA_101 - 5S ribosomal RNA
330225 330300 + 76 51594359 YPTB_RNA_11 - 12</sub> Thr tRNA
330319 330403 + 85 51594359 YPTB_RNA_12 - 18</sub> Tyr tRNA
330553 330627 + 75 51594359 YPTB_RNA_13 - 01</sub> Gly tRNA
330634 330709 + 76 51594359 YPTB_RNA_14 - 12</sub> Thr tRNA
360682 362227 + 1546 51594359 YPTB_RNA_102 - 16S ribosomal RNA
362361 362436 + 76 51594359 YPTB_RNA_15 - 04</sub> Glu tRNA
362689 365598 + 2910 51594359 YPTB_RNA_103 - 23S ribosomal RNA
365706 365825 + 120 51594359 YPTB_RNA_104 - 5S ribosomal RNA
470331 470406 - 76 51594359 YPTB_RNA_85 - 17</sub> Phe tRNA
500424 500499 + 76 51594359 YPTB_RNA_16 - 01</sub> Gly tRNA
500591 500666 + 76 51594359 YPTB_RNA_17 - 01</sub> Gly tRNA
500734 500809 + 76 51594359 YPTB_RNA_18 - 01</sub> Gly tRNA
562886 562972 + 87 51594359 YPTB_RNA_19 - 15</sub> Leu tRNA
563033 563109 + 77 51594359 YPTB_RNA_20 - 16</sub> Met tRNA
569847 570030 - 184 51594359 YPTB_RNA_115 - SraG RNA
626995 627079 + 85 51594359 YPTB_RNA_21 - 15</sub> Leu tRNA
674169 674255 - 87 51594359 YPTB_RNA_84 - 15</sub> Leu tRNA
674351 674437 - 87 51594359 YPTB_RNA_83 - 15</sub> Leu tRNA
674534 674620 - 87 51594359 YPTB_RNA_82 - 15</sub> Leu tRNA
994068 994160 + 93 51594359 YPTB_RNA_22 - 08</sub> Ser tRNA
994169 994245 + 77 51594359 YPTB_RNA_23 - 11</sub> Arg tRNA
994303 994379 + 77 51594359 YPTB_RNA_24 - 11</sub> Arg tRNA
994459 994535 + 77 51594359 YPTB_RNA_25 - 11</sub> Arg tRNA
994615 994686 + 72 51594359 YPTB_RNA_26 - Xaa tRNA
1018753 1020298 + 1546 51594359 YPTB_RNA_105 - 16S ribosomal RNA
1020398 1020474 + 77 51594359 YPTB_RNA_27 - 14</sub> Ile tRNA
1020526 1020601 + 76 51594359 YPTB_RNA_28 - 02</sub> Ala tRNA
1020820 1023726 + 2907 51594359 YPTB_RNA_106 - 23S ribosomal RNA
1023835 1023954 + 120 51594359 YPTB_RNA_107 - 5S ribosomal RNA
1175598 1175717 + 120 51594359 YPTB_RNA_86 - SRP RNA
1245199 1245275 + 77 51594359 YPTB_RNA_29 - 11</sub> Arg tRNA
1334962 1335036 - 75 51594359 YPTB_RNA_81 - 05</sub> Gln tRNA
1335042 1335118 - 77 51594359 YPTB_RNA_80 - 16</sub> Met tRNA
1335151 1335225 - 75 51594359 YPTB_RNA_79 - 05</sub> Gln tRNA
1335309 1335383 - 75 51594359 YPTB_RNA_78 - 05</sub> Gln tRNA
1335413 1335497 - 85 51594359 YPTB_RNA_77 - 15</sub> Leu tRNA
1335505 1335581 - 77 51594359 YPTB_RNA_76 - 16</sub> Met tRNA
1359528 1359891 - 364 51594359 YPTB_RNA_88 - tmRNA
1386989 1387064 + 76 51594359 YPTB_RNA_30 - 10</sub> Lys tRNA
1387092 1387167 + 76 51594359 YPTB_RNA_31 - 10</sub> Lys tRNA
1387195 1387270 + 76 51594359 YPTB_RNA_32 - 10</sub> Lys tRNA
1387298 1387373 + 76 51594359 YPTB_RNA_33 - 10</sub> Lys tRNA
1387402 1387471 + 70 51594359 YPTB_RNA_34 - 10</sub> Lys tRNA
1387569 1387638 + 70 51594359 YPTB_RNA_35 - Xaa tRNA
1387736 1387805 + 70 51594359 YPTB_RNA_36 - 10</sub> Lys tRNA
1508762 1508903 - 142 51594359 YPTB_RNA_91 - antisense RNA affecting ompF expression
1510666 1510753 + 88 51594359 YPTB_RNA_37 - 08</sub> Ser tRNA
1510759 1510834 + 76 51594359 YPTB_RNA_38 - 12</sub> Thr tRNA
1543259 1543335 - 77 51594359 YPTB_RNA_75 - 03</sub> Pro tRNA
1759383 1759470 + 88 51594359 YPTB_RNA_39 - 08</sub> Ser tRNA
1949762 1949837 - 76 51594359 YPTB_RNA_74 - 07</sub> Asn tRNA
1960828 1960903 - 76 51594359 YPTB_RNA_73 - 07</sub> Asn tRNA
2014703 2014952 - 250 51594359 YPTB_RNA_116 - SraC_RyeA RNA
2014813 2014918 + 106 51594359 YPTB_RNA_120 - RyeB RNA
2090133 2090208 + 76 51594359 YPTB_RNA_40 - 10</sub> Lys tRNA
2096657 2096732 + 76 51594359 YPTB_RNA_41 - 01</sub> Gly tRNA
2096785 2096858 + 74 51594359 YPTB_RNA_42 - 19</sub> Cys tRNA
2096869 2096954 + 86 51594359 YPTB_RNA_43 - 15</sub> Leu tRNA
2249472 2249547 - 76 51594359 YPTB_RNA_72 - 07</sub> Asn tRNA
2368848 2368937 - 90 51594359 YPTB_RNA_71 - 08</sub> Ser tRNA
2376517 2376606 - 90 51594359 YPTB_RNA_70 - 08</sub> Ser tRNA
2469384 2469468 - 85 51594359 YPTB_RNA_69 - 18</sub> Tyr tRNA
2469534 2469618 - 85 51594359 YPTB_RNA_68 - 18</sub> Tyr tRNA
2721115 2721191 + 77 51594359 YPTB_RNA_44 - 13</sub> Val tRNA
2721251 2721327 + 77 51594359 YPTB_RNA_45 - 13</sub> Val tRNA
2721497 2721573 + 77 51594359 YPTB_RNA_46 - 13</sub> Val tRNA
2922674 2923011 + 338 51594359 YPTB_RNA_117 - rne5 5' UTR element of RNaseE gene
3129140 3129214 - 75 51594359 YPTB_RNA_67 - 11</sub> Arg tRNA
3198555 3198630 - 76 51594359 YPTB_RNA_66 - 10</sub> Lys tRNA
3198830 3198905 - 76 51594359 YPTB_RNA_65 - 13</sub> Val tRNA
3198950 3199025 - 76 51594359 YPTB_RNA_64 - 13</sub> Val tRNA
3199062 3199137 - 76 51594359 YPTB_RNA_63 - 13</sub> Val tRNA
3201059 3201134 + 76 51594359 YPTB_RNA_47 - 02</sub> Ala tRNA
3201212 3201287 + 76 51594359 YPTB_RNA_48 - 02</sub> Ala tRNA
3404860 3405024 + 165 51594359 YPTB_RNA_118 - tke1 RNA
3497889 3497965 - 77 51594359 YPTB_RNA_62 - 06</sub> Asp tRNA
3505348 3505424 - 77 51594359 YPTB_RNA_61 - 06</sub> Asp tRNA
3505548 3505667 - 120 51594359 YPTB_RNA_108 - 5S ribosomal RNA
3505775 3508681 - 2907 51594359 YPTB_RNA_109 - 23S ribosomal RNA
3508934 3509009 - 76 51594359 YPTB_RNA_60 - 04</sub> Glu tRNA
3509143 3510688 - 1546 51594359 YPTB_RNA_110 - 16S ribosomal RNA
3550076 3550357 - 282 51594359 YPTB_RNA_90 - regulatory RNA csrB
3562220 3562296 + 77 51594359 YPTB_RNA_49 - 16</sub> Met tRNA
3562464 3562540 + 77 51594359 YPTB_RNA_50 - 16</sub> Met tRNA
3562601 3562677 + 77 51594359 YPTB_RNA_51 - 16</sub> Met tRNA
3719418 3719491 - 74 51594359 YPTB_RNA_59 - 01</sub> Gly tRNA
3749921 3750102 + 182 51594359 YPTB_RNA_92 - 6S RNA
3809995 3810070 + 76 51594359 YPTB_RNA_52 - 17</sub> Phe tRNA
4043205 4043394 - 190 51594359 YPTB_RNA_119 - RFN element; FMN riboswitch
4062048 4062124 + 77 51594359 YPTB_RNA_53 - 16</sub> Met tRNA
4157130 4157504 - 375 51594359 YPTB_RNA_87 - RNA component of RNaseP
4367448 4367567 - 120 51594359 YPTB_r01 - 5S ribosomal RNA
4367606 4367681 - 76 51594359 YPTB_RNA_58 - 12</sub> Thr tRNA
4367695 4367814 - 120 51594359 YPTB_RNA_111 - 5S ribosomal RNA
4367922 4370828 - 2907 51594359 YPTB_RNA_112 - 23S ribosomal RNA
4371047 4371122 - 76 51594359 YPTB_RNA_57 - 02</sub> Ala tRNA
4371174 4371250 - 77 51594359 YPTB_RNA_56 - 14</sub> Ile tRNA
4371350 4372891 - 1542 51594359 YPTB_RNA_111.1 - 16S ribosomal RNA
4593512 4593588 - 77 51594359 YPTB_RNA_55 - 03</sub> Pro tRNA
4637882 4637972 - 91 51594359 YPTB_RNA_54 - Sec tRNA