ФЭНДОМ


   LOCUS       NC_006298               5178 bp    DNA     circular BCT 27-JUN-2007
   DEFINITION  Haemophilus somnus 129PT plasmid pHS129, complete sequence.
   ACCESSION   NC_006298
   VERSION     NC_006298.1  GI:52421262
   KEYWORDS    .
   SOURCE      Haemophilus somnus 129PT
     ORGANISM  Haemophilus somnus 129PT
               Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales;
               Pasteurellaceae; Histophilus.
   REFERENCE   1  (bases 1 to 5178)
     AUTHORS   Challacombe,J.F., Duncan,A.J., Brettin,T.S., Bruce,D., Chertkov,O.,
               Detter,J.C., Han,C.S., Misra,M., Richardson,P., Tapia,R.,
               Thayer,N., Xie,G. and Inzana,T.J.
     TITLE     Complete genome sequence of Haemophilus somnus (Histophilus somni)
               strain 129Pt and comparison to Haemophilus ducreyi 35000HP and
               Haemophilus influenzae Rd
     JOURNAL   J. Bacteriol. 189 (5), 1890-1898 (2007)
      PUBMED   17172329
   REFERENCE   2  (bases 1 to 5178)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (22-SEP-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5178)
     CONSRTM   Joint Genome Institute Microbial Sequencing, Finishing and
               Annotation Team
     TITLE     Direct Submission
     JOURNAL   Submitted (02-SEP-2004) Joint Genome Institute, Department of
               Energy, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000019.
               Haemophilus somnus strain 129Pt was isolated from the prepuce of a
               healthy bull at the Washington State Animal Disease Diagnostic
               Laboratory.  This strain lacks several known virulence attributes
               and is relatively avirulent in challenge models. In general H.
               somnus is the cause of a variety of systemic diseases in cattle,
               including thrombotic-meningoencephalitis, pneumonia, abortion and
               other reproductive diseases, arthritis, myocarditis, and
               septicemia. Plasmid and fosmid libraries of H.somnus (strain 129Pt)
               were prepared and shotgun sequencing was performed at the JGI
               Production Genomics Facility (JGI-PGF) in WalnutCreek, CA. to a
               coverage of 6x.  Draft reads produced one contig with reads from
               only plasmid libraries and one gap closed by PCR. Gene predictions
               were performed using Glimmer and basic analysis was performed by
               searching the coding sequences against the Pfam, BLOCKS, COGS and
               PDB databases. Six genes have been annotated and two plasmid
               replication proteins identified.
               COMPLETENESS: full length.