ФЭНДОМ


   LOCUS       NC_007333            3642249 bp    DNA     circular BCT 16-AUG-2007
   DEFINITION  Thermobifida fusca YX, complete genome.
   ACCESSION   NC_007333
   VERSION     NC_007333.1  GI:72160406
   KEYWORDS    .
   SOURCE      Thermobifida fusca YX
     ORGANISM  Thermobifida fusca YX
               Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
               Streptosporangineae; Nocardiopsaceae; Thermobifida.
   REFERENCE   1  (bases 1 to 3642249)
     AUTHORS   Lykidis,A., Mavromatis,K., Ivanova,N., Anderson,I., Land,M.,
               DiBartolo,G., Martinez,M., Lapidus,A., Lucas,S., Copeland,A.,
               Richardson,P., Wilson,D.B. and Kyrpides,N.
     TITLE     Genome sequence and analysis of the soil cellulolytic actinomycete
               Thermobifida fusca YX
     JOURNAL   J. Bacteriol. 189 (6), 2477-2486 (2007)
      PUBMED   17209016
   REFERENCE   2  (bases 1 to 3642249)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (10-AUG-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3642249)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Di Bartolo,G.,
               Chain,P., Schmutz,J., Larimer,F., Land,M., Lykidis,A. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (25-JUL-2005) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000088.
               URL -- http://www.jgi.doe.gov
               Source DNA and bacteria available from David Wilson
               (dbw3@cornell.edu)
               Whole genome sequencing and draft assembly at JGI-PGF
               Finishing done by JGI-PGF
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               COMPLETENESS: full length.


Расположение РНК Править

Начало Конец Направление Длина PID Ген COG Комментарий
12591 12664 + 74 72160406 Tfu_R0001 - 14</sub> Ile tRNA
32306 32393 + 88 72160406 Tfu_R0002 - 08</sub> Ser tRNA
57392 57483 - 92 72160406 Tfu_R0003 - SRP RNA; RNA component of signal recognitionparticle
57613 57697 + 85 72160406 Tfu_R0004 - 08</sub> Ser tRNA
106706 106795 - 90 72160406 Tfu_R0005 - 08</sub> Ser tRNA
128270 128346 - 77 72160406 Tfu_R0006 - 03</sub> Pro tRNA
243307 243382 + 76 72160406 Tfu_R0007 - 12</sub> Thr tRNA
413892 413967 - 76 72160406 Tfu_R0008 - 11</sub> Arg tRNA
423371 423444 + 74 72160406 Tfu_R0009 - 02</sub> Ala tRNA
465582 465653 + 72 72160406 Tfu_R0010 - 05</sub> Gln tRNA
489279 489352 + 74 72160406 Tfu_R0011 - 15</sub> Leu tRNA
616275 616351 + 77 72160406 Tfu_R0012 - 16</sub> Met tRNA
616612 616688 + 77 72160406 Tfu_R0013 - 16</sub> Met tRNA
726244 726315 + 72 72160406 Tfu_R0014 - 05</sub> Gln tRNA
726378 726450 + 73 72160406 Tfu_R0015 - 04</sub> Glu tRNA
726571 726646 + 76 72160406 Tfu_R0016 - 04</sub> Glu tRNA
1027508 1027583 + 76 72160406 Tfu_R0017 - 07</sub> Asn tRNA
1037549 1037625 + 77 72160406 Tfu_R0018 - 16</sub> Met tRNA
1377115 1377201 - 87 72160406 Tfu_R0019 - 15</sub> Leu tRNA
1443042 1443115 - 74 72160406 Tfu_R0020 - 03</sub> Pro tRNA
2284041 2284368 - 328 72160406 Tfu_R0021 - RNA component of RNaseP
2296780 2296853 - 74 72160406 Tfu_R0022 - 13</sub> Val tRNA
2386815 2386930 - 116 72160406 Tfu_R0023 - 5S ribosomal RNA
2387032 2390133 - 3102 72160406 Tfu_R0024 - 23S ribosomal RNA
2390559 2392029 - 1471 72160406 Tfu_R0025 - 16S ribosomal RNA
2471210 2471286 - 77 72160406 Tfu_R0026 - 13</sub> Val tRNA
2474102 2474177 + 76 72160406 Tfu_R0027 - 01</sub> Gly tRNA
2474212 2474284 + 73 72160406 Tfu_R0028 - 01</sub> Gly tRNA
2474311 2474385 + 75 72160406 Tfu_R0029 - 13</sub> Val tRNA
2476556 2476628 + 73 72160406 Tfu_R0030 - 01</sub> Gly tRNA
2476669 2476739 + 71 72160406 Tfu_R0031 - 19</sub> Cys tRNA
2476757 2476831 + 75 72160406 Tfu_R0032 - 13</sub> Val tRNA
2544226 2544298 - 73 72160406 Tfu_R0033 - 02</sub> Ala tRNA
2544721 2544793 - 73 72160406 Tfu_R0034 - 02</sub> Ala tRNA
2579506 2579583 - 78 72160406 Tfu_R0035 - 03</sub> Pro tRNA
2579691 2579761 + 71 72160406 Tfu_R0036 - 01</sub> Gly tRNA
2620594 2620669 - 76 72160406 Tfu_R0037 - 11</sub> Arg tRNA
2673862 2673934 + 73 72160406 Tfu_R0038 - 09</sub> His tRNA
2729672 2729747 - 76 72160406 Tfu_R0039 - 10</sub> Lys tRNA
2731568 2731643 - 76 72160406 Tfu_R0040 - 10</sub> Lys tRNA
2776923 2776998 + 76 72160406 Tfu_R0041 - 15</sub> Leu tRNA
2781709 2781824 - 116 72160406 Tfu_R0042 - 5S ribosomal RNA
2781926 2785027 - 3102 72160406 Tfu_R0043 - 23S ribosomal RNA
2785453 2786923 - 1471 72160406 Tfu_R0044 - 16S ribosomal RNA
2849594 2849668 + 75 72160406 Tfu_R0045 - 11</sub> Arg tRNA
2911968 2912337 - 370 72160406 Tfu_R0046 - tmRNA
3039071 3039186 - 116 72160406 Tfu_R0047 - 5S ribosomal RNA
3039288 3042389 - 3102 72160406 Tfu_R0048 - 23S ribosomal RNA
3042912 3044382 - 1471 72160406 Tfu_R0049 - 16S ribosomal RNA
3129045 3129120 - 76 72160406 Tfu_R0050 - 20</sub> Trp tRNA
3135409 3135484 - 76 72160406 Tfu_R0051 - 16</sub> Met tRNA
3135588 3135663 - 76 72160406 Tfu_R0052 - 12</sub> Thr tRNA
3144854 3144936 - 83 72160406 Tfu_R0053 - 18</sub> Tyr tRNA
3259061 3259134 - 74 72160406 Tfu_R0054 - 12</sub> Thr tRNA
3272883 3272968 + 86 72160406 Tfu_R0055 - 15</sub> Leu tRNA
3355836 3355908 - 73 72160406 Tfu_R0056 - 17</sub> Phe tRNA
3355937 3356011 - 75 72160406 Tfu_R0057 - 06</sub> Asp tRNA
3356132 3356204 - 73 72160406 Tfu_R0058 - 04</sub> Glu tRNA
3372207 3372282 - 76 72160406 Tfu_R0059 - 10</sub> Lys tRNA
3447314 3447387 + 74 72160406 Tfu_R0060 - 01</sub> Gly tRNA
3458625 3458697 - 73 72160406 Tfu_R0061 - 11</sub> Arg tRNA
3539236 3539327 + 92 72160406 Tfu_R0062 - 08</sub> Ser tRNA
3574916 3575001 - 86 72160406 Tfu_R0063 - 15</sub> Leu tRNA
3588493 3588565 - 73 72160406 Tfu_R0064 - 02</sub> Ala tRNA
3590712 3590827 - 116 72160406 Tfu_R0065 - 5S ribosomal RNA
3590929 3594030 - 3102 72160406 Tfu_R0066 - 23S ribosomal RNA
3594580 3596050 - 1471 72160406 Tfu_R0067 - 16S ribosomal RNA