ФЭНДОМ


   LOCUS       NC_007492            6438405 bp    DNA     circular BCT 04-APR-2006
   DEFINITION  Pseudomonas fluorescens PfO-1, complete genome.
   ACCESSION   NC_007492
   VERSION     NC_007492.1  GI:77456228
   KEYWORDS    .
   SOURCE      Pseudomonas fluorescens PfO-1
     ORGANISM  Pseudomonas fluorescens PfO-1
               Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
               Pseudomonadaceae; Pseudomonas.
   REFERENCE   1  (bases 1 to 6438405)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Saunders,E.H.,
               Schmutz,J., Larimer,F., Land,M., Kyripides,N., Anderson,I. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Pseudomonas fluorescens PfO-1
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 6438405)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (11-OCT-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 6438405)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Saunders,E.H.,
               Schmutz,J., Larimer,F., Land,M., Anderson,I. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (08-AUG-2005) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000094.
               URL -- http://www.jgi.doe.gov
               Source DNA and bacteria available from Mark Silby
               (mark.silby@tufts.edu)
               Whole genome sequencing and draft assembly at JGI-PGF
               Finishing done by JGI-LANL
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               COMPLETENESS: full length.


Расположение РНК Править

Начало Конец Направление Длина PID Ген COG Комментарий
121476 123002 + 1527 77456228 Pfl_R1 - 16S ribosomal RNA
123085 123161 + 77 77456228 Pfl_R2 - 14</sub> Ile tRNA
123192 123267 + 76 77456228 Pfl_R3 - 02</sub> Ala tRNA
123512 126403 + 2892 77456228 Pfl_R4 - 23S ribosomal RNA
126568 126682 + 115 77456228 Pfl_R5 - 5S ribosomal RNA
126790 126904 + 115 77456228 Pfl_R6 - 5S ribosomal RNA
224796 224872 - 77 77456228 Pfl_R7 - 11</sub> Arg tRNA
353031 353106 - 76 77456228 Pfl_R8 - 12</sub> Thr tRNA
363599 363674 - 76 77456228 Pfl_R9 - 17</sub> Phe tRNA
617488 617574 - 87 77456228 Pfl_R10 - 15</sub> Leu tRNA
617756 617842 - 87 77456228 Pfl_R11 - 15</sub> Leu tRNA
803037 804563 + 1527 77456228 Pfl_R12 - 16S ribosomal RNA
804646 804722 + 77 77456228 Pfl_R13 - 14</sub> Ile tRNA
804753 804828 + 76 77456228 Pfl_R14 - 02</sub> Ala tRNA
805073 807964 + 2892 77456228 Pfl_R15 - 23S ribosomal RNA
808130 808244 + 115 77456228 Pfl_R16 - 5S ribosomal RNA
878831 879220 - 390 77456228 Pfl_R17 - tmRNA
911327 911412 + 86 77456228 Pfl_R18 - 15</sub> Leu tRNA
911510 911586 + 77 77456228 Pfl_R19 - 16</sub> Met tRNA
920579 920654 + 76 77456228 Pfl_R20 - 12</sub> Thr tRNA
1365707 1365783 - 77 77456228 Pfl_R21 - 16</sub> Met tRNA
1365987 1366063 - 77 77456228 Pfl_R22 - 16</sub> Met tRNA
1506385 1506458 - 74 77456228 Pfl_R23 - 01</sub> Gly tRNA
1547918 1548007 + 90 77456228 Pfl_R24 - 08</sub> Ser tRNA
1860616 1860691 + 76 77456228 Pfl_R25 - 13</sub> Val tRNA
1860711 1860787 + 77 77456228 Pfl_R26 - 06</sub> Asp tRNA
1860978 1861053 + 76 77456228 Pfl_R27 - 13</sub> Val tRNA
1861073 1861149 + 77 77456228 Pfl_R28 - 06</sub> Asp tRNA
1938174 1938263 + 90 77456228 Pfl_R29 - 08</sub> Ser tRNA
2014278 2014394 + 117 77456228 Pfl_R30 - SRP RNA; RNA component of signal recognition particle
2135240 2135315 - 76 77456228 Pfl_R31 - 07</sub> Asn tRNA
2144196 2144271 + 76 77456228 Pfl_R32 - 02</sub> Ala tRNA
2144351 2144426 + 76 77456228 Pfl_R33 - 04</sub> Glu tRNA
2144480 2144555 + 76 77456228 Pfl_R34 - 02</sub> Ala tRNA
2144634 2144709 + 76 77456228 Pfl_R35 - 04</sub> Glu tRNA
2176406 2176481 + 76 77456228 Pfl_R36 - 13</sub> Val tRNA
2176537 2176613 + 77 77456228 Pfl_R37 - 06</sub> Asp tRNA
2176707 2176783 + 77 77456228 Pfl_R38 - 06</sub> Asp tRNA
2184300 2184376 + 77 77456228 Pfl_R39 - 13</sub> Val tRNA
2207840 2207916 + 77 77456228 Pfl_R40 - 03</sub> Pro tRNA
2549539 2551065 + 1527 77456228 Pfl_R41 - 16S ribosomal RNA
2551148 2551224 + 77 77456228 Pfl_R42 - 14</sub> Ile tRNA
2551255 2551330 + 76 77456228 Pfl_R43 - 02</sub> Ala tRNA
2551575 2554466 + 2892 77456228 Pfl_R44 - 23S ribosomal RNA
2554632 2554746 + 115 77456228 Pfl_R45 - 5S ribosomal RNA
2710914 2710988 - 75 77456228 Pfl_R46 - 05</sub> Gln tRNA
2845505 2845592 - 88 77456228 Pfl_R47 - 08</sub> Ser tRNA
3506452 3506538 - 87 77456228 Pfl_R48 - 15</sub> Leu tRNA
3506734 3506807 - 74 77456228 Pfl_R49 - 19</sub> Cys tRNA
3506854 3506929 - 76 77456228 Pfl_R50 - 01</sub> Gly tRNA
4181262 4181337 - 76 77456228 Pfl_R51 - Xaa tRNA
4188207 4188282 - 76 77456228 Pfl_R52 - 09</sub> His tRNA
4188359 4188443 - 85 77456228 Pfl_R53 - 15</sub> Leu tRNA
4188502 4188577 - 76 77456228 Pfl_R54 - 09</sub> His tRNA
4188610 4188686 - 77 77456228 Pfl_R55 - 11</sub> Arg tRNA
4416516 4416630 - 115 77456228 Pfl_R56 - 5S ribosomal RNA
4416795 4419686 - 2892 77456228 Pfl_R57 - 23S ribosomal RNA
4419931 4420006 - 76 77456228 Pfl_R58 - 02</sub> Ala tRNA
4420037 4420113 - 77 77456228 Pfl_R59 - 14</sub> Ile tRNA
4420196 4421722 - 1527 77456228 Pfl_R60 - 16S ribosomal RNA
4728952 4729027 - 76 77456228 Pfl_R61 - 01</sub> Gly tRNA
4729030 4729105 - 76 77456228 Pfl_R62 - 04</sub> Glu tRNA
4729163 4729238 - 76 77456228 Pfl_R63 - 01</sub> Gly tRNA
4729241 4729316 - 76 77456228 Pfl_R64 - 04</sub> Glu tRNA
4729421 4729496 - 76 77456228 Pfl_R65 - 01</sub> Gly tRNA
4729499 4729574 - 76 77456228 Pfl_R66 - 04</sub> Glu tRNA
4816076 4816152 - 77 77456228 Pfl_R67 - 11</sub> Arg tRNA
4820541 4820617 - 77 77456228 Pfl_R68 - 11</sub> Arg tRNA
4820690 4820766 - 77 77456228 Pfl_R69 - 11</sub> Arg tRNA
4820839 4820915 - 77 77456228 Pfl_R70 - 11</sub> Arg tRNA
4821023 4821113 - 91 77456228 Pfl_R71 - 08</sub> Ser tRNA
4959539 4959614 - 76 77456228 Pfl_R72 - 10</sub> Lys tRNA
5221822 5221906 + 85 77456228 Pfl_R73 - 15</sub> Leu tRNA
5286536 5286826 - 291 77456228 Pfl_R74 - RNA component of RNaseP
5356918 5356992 + 75 77456228 Pfl_R75 - 05</sub> Gln tRNA
5364391 5364467 + 77 77456228 Pfl_R76 - 16</sub> Met tRNA
5393082 5393196 - 115 77456228 Pfl_R77 - 5S ribosomal RNA
5393352 5396243 - 2892 77456228 Pfl_R78 - 23S ribosomal RNA
5396488 5396563 - 76 77456228 Pfl_R79 - 02</sub> Ala tRNA
5396594 5396670 - 77 77456228 Pfl_R80 - 14</sub> Ile tRNA
5396753 5398279 - 1527 77456228 Pfl_R81 - 16S ribosomal RNA
5451112 5451188 - 77 77456228 Pfl_R82 - 03</sub> Pro tRNA
5451286 5451361 - 76 77456228 Pfl_R83 - 10</sub> Lys tRNA
5451367 5451443 - 77 77456228 Pfl_R84 - 03</sub> Pro tRNA
5451453 5451528 - 76 77456228 Pfl_R85 - 07</sub> Asn tRNA
5722233 5722308 - 76 77456228 Pfl_R86 - 20</sub> Trp tRNA
5723641 5723716 - 76 77456228 Pfl_R87 - 12</sub> Thr tRNA
5723743 5723816 - 74 77456228 Pfl_R88 - 01</sub> Gly tRNA
5723842 5723926 - 85 77456228 Pfl_R89 - 18</sub> Tyr tRNA
5726344 5726458 - 115 77456228 Pfl_R90 - 5S ribosomal RNA
5726624 5729515 - 2892 77456228 Pfl_R91 - 23S ribosomal RNA
5729760 5729835 - 76 77456228 Pfl_R92 - 02</sub> Ala tRNA
5729866 5729942 - 77 77456228 Pfl_R93 - 14</sub> Ile tRNA
5730025 5731551 - 1527 77456228 Pfl_R94 - 16S ribosomal RNA
5791565 5791641 + 77 77456228 Pfl_R95 - 16</sub> Met tRNA