ФЭНДОМ


   LOCUS       NC_008278            7497934 bp    DNA     circular BCT 13-SEP-2006
   DEFINITION  Frankia alni ACN14a, complete genome.
   ACCESSION   NC_008278
   VERSION     NC_008278.1  GI:111219505
   KEYWORDS    .
   SOURCE      Frankia alni ACN14a
     ORGANISM  Frankia alni ACN14a
               Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
               Frankineae; Frankiaceae; Frankia.
   REFERENCE   1  (bases 1 to 7497934)
     AUTHORS   Normand,P., Lapierre,P., Tisa,L., Gogarten,J.P., Alloisio,N.,
               Bagnarol,E., Bassi,C.A., Berry,A.M., Bickhart,D.M., Choisne,N.,
               Couloux,A., Cournoyer,B., Cruveiller,S., Daubin,V., Demange,N.,
               Francino,M.P., Goltsman,E., Huang,Y., Kopp,O.R., Labarre,L.,
               Lapidus,A., Lavire,C., Marechal,J., Martinez,M., Mastronunzio,J.E.,
               Mullin,B.C., Niemann,J., Pujic,P., Rawnsley,T., Rouy,Z.,
               Schenowitz,C., Sellstedt,A., Tavares,F., Tomkins,J.P., Vallenet,D.,
               Valverde,C., Wall,L.G., Wang,Y., Medigue,C. and Benson,D.R.
     TITLE     plant biogeography
     JOURNAL   Unpublished
     REMARK    1. UMR CNRS 5557 Ecologie Microbienne, IFR41 Bio Environnement et
               Sante Universite Lyon I, Villeurbanne 69622 cedex, France; 2.
               Department of Molecular and Cell Biology, University of
               Connecticut, Storrs, CT 06279 3. Department of Microbiology,
               University of New Hampshire, Durham, NH, 03824. 4. Department of
               Plant Sciences, University of California, Davis, CA 95616 5.
               INRA-URGV, 2 rue Gaston Cremieux BP5708 91057 Evry cedex, France 6.
               Genoscope, Centre National de Sequenage, 2 rue Gaston Cremieux
               BP5706 91057 Evry cedex, France. 7. Genoscope, CNRS-UMR 8030,
               Atelier de Genomique Comparative, 2 rue Gaston Cremieux BP5706
               91006 Evry cedex, France 8. Bioinformatics and Evolutionary
               Genomics Laboratory, UMR CNRS 5558, Universite Lyon I, Villeurbanne
               69622 cedex, France 9. DOE Joint Genome Institute, 2800 Mitchell
               Drive, Walnut Creek, CA 94598 10. Departments of Botany and
               Biochemistry, Cellular & Molecular Biology and The Genome Science &
               Technology Program, The University of Tennessee, Knoxville, TN
               37996 11. UPSC, Dept of Plant Physiology, Ume University, S-90187
               Ume, Sweden 12. Instituto de Biologia Molecular e Celular,
               Microbiologia Celular e Aplicada, Rua do Campo Alegre, 823,
               4150-180 Porto, Portugal. 13. Clemson University Genomics
               Institute, Room 304 Biosystems Research Complex, Clemson, SC 29634
               14. Departamento de Ciencia y Tecnologa, Universidad Nacional de
               Quilmes, Saenz Pea 180 Bernal B1876BXD Argentina
   REFERENCE   2  (bases 1 to 7497934)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (05-AUG-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 7497934)
     AUTHORS   Genoscope.
     TITLE     Direct Submission
     JOURNAL   Submitted (02-AUG-2006) Genoscope - Centre National de Sequencage :
               BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr
               - Web : www.genoscope.cns.fr)
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CT573213.
               Annotation data relative to BLAST similarities, COG assignations,
               enzymatic function prediction (PRIAM software), TMHMM and SignalP
               predictions, and synteny results (Syntonizer software) are
               available in FrankiaScope database via the MaGe annotation system
               http://www.genoscope.cns.fr/agc/mage/frankia.
               Each annotation includes a confidence level as follow: 1 : Function
               experimentally demonstrated in the studied organism 2a : Function
               of homologous gene experimentally demonstrated in an other organism
               2b : Function of strongly homologous gene
               3 : Function proposed based on presence of conserved amino acid
               motif, structural feature or limited homology
               4 : Homologs of previously reported genes of unknown function 5 :
               No homology to any previously reported sequences 6 : Doubtful CDS
               7 : Gene remnant.
               COMPLETENESS: full length.


Расположение РНК Править

Начало Конец Направление Длина PID Ген COG Комментарий
12962 13035 + 74 111219505 FRAALtRNA1 - 14</sub> Ile tRNA
137250 137322 + 73 111219505 FRAALtRNA2 - 04</sub> Glu tRNA
177989 178063 + 75 111219505 FRAALtRNA3 - 06</sub> Asp tRNA
178115 178191 + 77 111219505 FRAALtRNA4 - 17</sub> Phe tRNA
204978 205048 + 71 111219505 FRAALtRNA5 - Xaa tRNA
546902 546977 - 76 111219505 FRAALtRNA46 - 10</sub> Lys tRNA
674539 674623 + 85 111219505 FRAALtRNA6 - 08</sub> Ser tRNA
699770 699859 - 90 111219505 FRAALtRNA45 - 08</sub> Ser tRNA
706405 706576 - 172 111219505 FRAALmisc_RNA_5 - ydaO-yuaA
873916 874014 + 99 111219505 FRAALmisc_RNA_11 - THI
878235 878307 + 73 111219505 FRAALtRNA7 - 11</sub> Arg tRNA
973389 973482 - 94 111219505 FRAALtRNA44 - 08</sub> Ser tRNA
980960 981032 + 73 111219505 FRAALtRNA8 - 11</sub> Arg tRNA
1131905 1131989 + 85 111219505 FRAALtRNA9 - 18</sub> Tyr tRNA
1136365 1136440 + 76 111219505 FRAALtRNA10 - 12</sub> Thr tRNA
1136542 1136618 + 77 111219505 FRAALtRNA11 - 16</sub> Met tRNA
1139853 1139925 + 73 111219505 FRAALtRNA12 - 20</sub> Trp tRNA
1476388 1476755 + 368 111219505 FRAALmisc_RNA_8 - tmRNA
1621651 1621734 - 84 111219505 FRAALtRNA43 - 15</sub> Leu tRNA
1668077 1668201 - 125 111219505 FRAALmisc_RNA_10 - THI
1865012 1865087 - 76 111219505 FRAALtRNA42 - 10</sub> Lys tRNA
1890856 1890931 - 76 111219505 FRAALtRNA41 - 09</sub> His tRNA
1979427 1979502 - 76 111219505 FRAALtRNA40 - 11</sub> Arg tRNA
2068142 2068212 - 71 111219505 FRAALtRNA39 - 01</sub> Gly tRNA
2068260 2068335 + 76 111219505 FRAALtRNA13 - 03</sub> Pro tRNA
2110343 2110419 + 77 111219505 FRAALtRNA14 - 02</sub> Ala tRNA
2322222 2322296 - 75 111219505 FRAALtRNA38 - 13</sub> Val tRNA
2322310 2322381 - 72 111219505 FRAALtRNA37 - 19</sub> Cys tRNA
2322424 2322496 - 73 111219505 FRAALtRNA36 - 01</sub> Gly tRNA
2325024 2325095 + 72 111219505 FRAALtRNA15 - 13</sub> Val tRNA
2443756 2444106 - 351 111219505 FRAALmisc_RNA_7 - RNaseP_bact_a
2466719 2466792 - 74 111219505 FRAALtRNA35 - 03</sub> Pro tRNA
2716187 2716271 + 85 111219505 FRAALtRNA16 - 15</sub> Leu tRNA
4004615 4004893 + 279 111219505 FRAALmisc_RNA_3 - Cobalamin
4812206 4812404 - 199 111219505 FRAALmisc_RNA_2 - Cobalamin
5017631 5017703 + 73 111219505 FRAALtRNA17 - 15</sub> Leu tRNA
5477822 5477893 - 72 111219505 FRAALtRNA34 - 13</sub> Val tRNA
5629512 5629631 - 120 111219505 FRAAL_5S_2 - ribosomal RNA 5S
5629705 5632810 - 3106 111219505 FRAAL_23S_2 - ribosomal RNA 23S
5633232 5634741 - 1510 111219505 FRAAL_16S_2 - ribosomal RNA 16S
5661909 5662038 - 130 111219505 FRAALmisc_RNA_9 - RFN
5707959 5708031 + 73 111219505 FRAALtRNA18 - 07</sub> Asn tRNA
5904763 5904836 - 74 111219505 FRAALtRNA33 - 16</sub> Met tRNA
6318948 6319023 - 76 111219505 FRAALtRNA32 - 04</sub> Glu tRNA
6319118 6319189 - 72 111219505 FRAALtRNA31 - 05</sub> Gln tRNA
6357240 6357359 - 120 111219505 FRAAL_5S_1 - ribosomal RNA 5S
6357433 6360538 - 3106 111219505 FRAAL_23S_1 - ribosomal RNA 23S
6360960 6362469 - 1510 111219505 FRAAL_16S_1 - ribosomal RNA 16S
6456587 6456658 + 72 111219505 FRAALtRNA19 - 11</sub> Arg tRNA
6532197 6532273 - 77 111219505 FRAALtRNA30 - 16</sub> Met tRNA
6755294 6755371 - 78 111219505 FRAALtRNA29 - 15</sub> Leu tRNA
6816322 6816393 + 72 111219505 FRAALtRNA20 - 05</sub> Gln tRNA
6858396 6858469 + 74 111219505 FRAALtRNA21 - 02</sub> Ala tRNA
6999704 6999793 - 90 111219505 FRAALmisc_RNA_4 - gcvT
7056166 7056238 + 73 111219505 FRAALtRNA22 - 12</sub> Thr tRNA
7120303 7120379 - 77 111219505 FRAALtRNA28 - 03</sub> Pro tRNA
7167643 7167714 + 72 111219505 FRAALtRNA23 - 12</sub> Thr tRNA
7196302 7196390 - 89 111219505 FRAALtRNA27 - Xaa tRNA
7224368 7224438 - 71 111219505 FRAALtRNA26 - 01</sub> Gly tRNA
7256170 7256367 + 198 111219505 FRAALmisc_RNA_6 - ydaO-yuaA
7305359 7305465 + 107 111219505 FRAALmisc_RNA_1 - S_box
7354947 7355029 - 83 111219505 FRAALtRNA25 - 15</sub> Leu tRNA
7432405 7432477 - 73 111219505 FRAALtRNA24 - 02</sub> Ala tRNA