ФЭНДОМ


   LOCUS       NC_008435            5505494 bp    DNA     circular BCT 05-OCT-2006
   DEFINITION  Rhodopseudomonas palustris BisA53, complete genome.
   ACCESSION   NC_008435
   VERSION     NC_008435.1  GI:115522030
   KEYWORDS    .
   SOURCE      Rhodopseudomonas palustris BisA53
     ORGANISM  Rhodopseudomonas palustris BisA53
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
               Bradyrhizobiaceae; Rhodopseudomonas.
   REFERENCE   1  (bases 1 to 5505494)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Kim,E.,
               Harwood,C.S., Oda,Y. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Rhodopseudomonas palustris BisA53
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5505494)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (04-OCT-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5505494)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Kim,E.,
               Harwood,C.S., Oda,Y. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (07-SEP-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000463.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000371
               Source DNA and bacteria available from Caroline S. Harwood
               (csh5@u.washington.edu)Contacts: Caroline S. Harwood
               (csh5@u.washington.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК Править

Начало Конец Направление Длина PID Ген COG Комментарий
53344 53419 + 76 115522030 RPE_R0001 - 02</sub> Ala tRNA
70502 70577 - 76 115522030 RPE_R0002 - 12</sub> Thr tRNA
131900 131976 - 77 115522030 RPE_R0003 - 11</sub> Arg tRNA
452418 452492 + 75 115522030 RPE_R0005 - 01</sub> Gly tRNA
487400 487475 - 76 115522030 RPE_R0006 - 02</sub> Ala tRNA
553323 553409 + 87 115522030 RPE_R0007 - 15</sub> Leu tRNA
609133 609222 + 90 115522030 RPE_R0009 - 08</sub> Ser tRNA
712113 712189 - 77 115522030 RPE_R0010 - 11</sub> Arg tRNA
787043 787117 + 75 115522030 RPE_R0011 - 13</sub> Val tRNA
861574 863055 + 1482 115522030 RPE_R0012 - 16S ribosomal RNA
863295 863371 + 77 115522030 RPE_R0013 - 14</sub> Ile tRNA
863419 863494 + 76 115522030 RPE_R0014 - 02</sub> Ala tRNA
864126 866778 + 2653 115522030 RPE_R0015 - 23S ribosomal RNA
866937 867051 + 115 115522030 RPE_R0016 - 5S ribosomal RNA
879633 879717 - 85 115522030 RPE_R0017 - 15</sub> Leu tRNA
911929 912003 - 75 115522030 RPE_R0018 - 04</sub> Glu tRNA
1174349 1174425 - 77 115522030 RPE_R0019 - 16</sub> Met tRNA
1217418 1217492 + 75 115522030 RPE_R0020 - 05</sub> Gln tRNA
2309970 2310337 - 368 115522030 RPE_R0024 - RNA component of RNaseP
2367543 2367869 - 327 115522030 RPE_R0025 - tmRNA
2450931 2451006 + 76 115522030 RPE_R0026 - 10</sub> Lys tRNA
2550824 2550910 + 87 115522030 RPE_R0029 - 15</sub> Leu tRNA
2608855 2608929 + 75 115522030 RPE_R0030 - 12</sub> Thr tRNA
2771100 2771184 + 85 115522030 RPE_R0031 - 15</sub> Leu tRNA
2779292 2779368 + 77 115522030 RPE_R0032 - 13</sub> Val tRNA
2786010 2786086 + 77 115522030 RPE_R0033 - 06</sub> Asp tRNA
2999930 3000019 - 90 115522030 RPE_R0034 - 08</sub> Ser tRNA
3012925 3013018 + 94 115522030 RPE_R0035 - 08</sub> Ser tRNA
3052755 3052831 - 77 115522030 RPE_R0036 - 11</sub> Arg tRNA
3086508 3086581 + 74 115522030 RPE_R0037 - 19</sub> Cys tRNA
3088451 3088525 - 75 115522030 RPE_R0038 - 07</sub> Asn tRNA
3122684 3122759 - 76 115522030 RPE_R0039 - 10</sub> Lys tRNA
3181412 3181489 - 78 115522030 RPE_R0040 - 03</sub> Pro tRNA
3270585 3270661 - 77 115522030 RPE_R0041 - 03</sub> Pro tRNA
3274587 3274661 + 75 115522030 RPE_R0042 - 04</sub> Glu tRNA
3487645 3487850 - 206 115522030 RPE_R0043 -
3829967 3830051 - 85 115522030 RPE_R0047 - 15</sub> Leu tRNA
3841218 3841294 + 77 115522030 RPE_R0048 - 11</sub> Arg tRNA
4031186 4031261 - 76 115522030 RPE_R0049 - 20</sub> Trp tRNA
4093728 4093801 - 74 115522030 RPE_R0050 - 01</sub> Gly tRNA
4110473 4110558 - 86 115522030 RPE_R0051 - 18</sub> Tyr tRNA
4121694 4121767 + 74 115522030 RPE_R0052 - 05</sub> Gln tRNA
4378927 4379003 - 77 115522030 RPE_R0053 - 16</sub> Met tRNA
4548052 4548128 - 77 115522030 RPE_R0054 - 09</sub> His tRNA
4785431 4785506 - 76 115522030 RPE_R0055 - 16</sub> Met tRNA
4799089 4799163 + 75 115522030 RPE_R0056 - 13</sub> Val tRNA
4850428 4850542 - 115 115522030 RPE_R0059 - 5S ribosomal RNA
4850692 4853344 - 2653 115522030 RPE_R0060 - 23S ribosomal RNA
4853944 4854019 - 76 115522030 RPE_R0061 - 02</sub> Ala tRNA
4854067 4854143 - 77 115522030 RPE_R0062 - 14</sub> Ile tRNA
4854382 4855863 - 1482 115522030 RPE_R0063 - 16S ribosomal RNA
4911104 4911180 - 77 115522030 RPE_R0064 - 03</sub> Pro tRNA
5015656 5015731 - 76 115522030 RPE_R0065 - 17</sub> Phe tRNA
5031742 5031816 + 75 115522030 RPE_R0066 - 12</sub> Thr tRNA
5088333 5088422 + 90 115522030 RPE_R0067 - 08</sub> Ser tRNA
5202363 5202439 + 77 115522030 RPE_R0068 - 11</sub> Arg tRNA
5393342 5393446 - 105 115522030 RPE_R0069 - SRP RNA; RNA component of signal recognition particle
5450554 5450627 - 74 115522030 RPE_R0070 - 01</sub> Gly tRNA