ФЭНДОМ


   LOCUS       NC_008497            2291220 bp    DNA     circular BCT 31-OCT-2006
   DEFINITION  Lactobacillus brevis ATCC 367, complete genome.
   ACCESSION   NC_008497
   VERSION     NC_008497.1  GI:116332681
   KEYWORDS    .
   SOURCE      Lactobacillus brevis ATCC 367
     ORGANISM  Lactobacillus brevis ATCC 367
               Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae;
               Lactobacillus.
   REFERENCE   1  (bases 1 to 2291220)
     AUTHORS   Makarova,K., Slesarev,A., Wolf,Y., Sorokin,A., Mirkin,B.,
               Koonin,E., Pavolv,A., Pavlova,N., Karamychev,V., Polouchine,N.,
               Shakhova,V., Grigoriev,I., Lou,Y., Rohksar,D., Lucas,S., Huang,K.,
               Goldstein,D.M., Hawkins,T., Plengvidhya,V., Welker,D., Hughes,J.,
               Goh,Y., Benson,A., Baldwin,K., Lee,J.-H., Diaz-Muniz,I., Dosti,B.,
               Smeianov,V., Wechter,W., Barabote,R., Lorca,G., Altermann,E.,
               Barrangou,R., Ganesan,B., Xie,Y., Rawsthorne,H., Tamir,D.,
               Parker,C., Breidt,F., Broadbent,J., Hutkins,R., O'Sulllivan,D.,
               Steele,J., Unlu,G., Saier,M., Klaenhammer,T., Richardson,P.,
               Kozyavkin,S., Weimer,B. and Mills,D.
     TITLE     Comparative genomics of the lactic acid bacteria
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15611-15616 (2006)
      PUBMED   17030793
   REFERENCE   2  (bases 1 to 2291220)
     AUTHORS   .
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (21-OCT-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2291220)
     AUTHORS   Lucas,S., Copeland,A., Detter,J.C., Glavina del Rio,T., Pitluck,S.,
               Grigoriev,I., Rokhsar,D., Slesarev,A., Pavlov,A., Pavlova,N.,
               Karamychev,V., Polouchine,N., Shakhova,V., Kozyavkin,S.,
               Makarova,K., Koonin,E., Mills,D.A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria
               Genome Consortium and Fidelity Systems Inc.
     TITLE     Direct Submission
     JOURNAL   Submitted (22-MAY-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000416.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 2662178
               Source DNA and bacteria available from Milton Saier
               (msaier@ucsd.edu)
               Bacteria also available from ATCC: ATCC 367
               Contacts: Milton Saier (msaier@ucsd.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Annotation done by Kira Makarova and Eugene Koonin
               Finishing done by Fidelity Systems Inc. (Gaithersburg)URL --
               http://www.fidelitysystems.com
               Project Information available at:
               http://genome.jgi-psf.org/mic_home.html
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК Править

Начало Конец Направление Длина PID Ген COG Комментарий
31448 31523 - 76 116332681 LVIS_t0028 - 10</sub> Lys tRNA
76914 76986 + 73 116332681 LVIS_t0073 - 04</sub> Glu tRNA
76996 77067 + 72 116332681 LVIS_t0074 - 05</sub> Gln tRNA
86149 87711 + 1563 116332681 LVIS_r0082 - 16S ribosomal RNA
87928 90845 + 2918 116332681 LVIS_r0083 - 23S ribosomal RNA
90914 91032 + 119 116332681 LVIS_r0084 - 5S ribosomal RNA
453214 454776 + 1563 116332681 LVIS_r0425 - 16S ribosomal RNA
454993 457910 + 2918 116332681 LVIS_r0426 - 23S ribosomal RNA
457979 458097 + 119 116332681 LVIS_r0427 - 5S ribosomal RNA
458170 458242 + 73 116332681 LVIS_t0428 - 12</sub> Thr tRNA
562993 564555 + 1563 116332681 LVIS_r0526 - 16S ribosomal RNA
564635 564709 + 75 116332681 LVIS_t0527 - 14</sub> Ile tRNA
564732 564804 + 73 116332681 LVIS_t0528 - 02</sub> Ala tRNA
564974 567891 + 2918 116332681 LVIS_r0529 - 23S ribosomal RNA
567960 568078 + 119 116332681 LVIS_r0530 - 5S ribosomal RNA
568083 568155 + 73 116332681 LVIS_t0531 - 07</sub> Asn tRNA
568187 568262 + 76 116332681 LVIS_t0532 - 12</sub> Thr tRNA
571607 571689 + 83 116332681 LVIS_t0536 - 18</sub> Tyr tRNA
571699 571773 + 75 116332681 LVIS_t0537 - 05</sub> Gln tRNA
582938 583022 + 85 116332681 LVIS_t0549 - 15</sub> Leu tRNA
686104 686178 + 75 116332681 LVIS_t0657 - 11</sub> Arg tRNA
686979 687050 + 72 116332681 LVIS_t0659 - 11</sub> Arg tRNA
874659 874999 - 341 116332681 LVIS_r0847 - RNA_RNaseP_classB
1118040 1118112 - 73 116332681 LVIS_t1109 - Xaa tRNA
1118275 1118332 - 58 116332681 LVIS_t1110 - Xaa tRNA
1118379 1118461 - 83 116332681 LVIS_t1111 - 18</sub> Tyr tRNA
1141829 1141903 - 75 116332681 LVIS_t1152 - 06</sub> Asp tRNA
1141909 1141982 - 74 116332681 LVIS_t1153 - 16</sub> Met tRNA
1142003 1142075 - 73 116332681 LVIS_t1154 - 04</sub> Glu tRNA
1142083 1142170 - 88 116332681 LVIS_t1155 - 08</sub> Ser tRNA
1142175 1142249 - 75 116332681 LVIS_t1156 - 14</sub> Ile tRNA
1142256 1142326 - 71 116332681 LVIS_t1157 - 01</sub> Gly tRNA
1142342 1142414 - 73 116332681 LVIS_t1158 - 17</sub> Phe tRNA
1142467 1142541 - 75 116332681 LVIS_t1159 - 06</sub> Asp tRNA
1142547 1142620 - 74 116332681 LVIS_t1160 - 16</sub> Met tRNA
1142631 1142720 - 90 116332681 LVIS_t1161 - 08</sub> Ser tRNA
1142754 1142827 - 74 116332681 LVIS_t1162 - 16</sub> Met tRNA
1142842 1142915 - 74 116332681 LVIS_t1163 - 16</sub> Met tRNA
1142942 1143015 - 74 116332681 LVIS_t1164 - 03</sub> Pro tRNA
1143022 1143095 - 74 116332681 LVIS_t1165 - 11</sub> Arg tRNA
1143128 1143199 - 72 116332681 LVIS_t1166 - 01</sub> Gly tRNA
1143205 1143277 - 73 116332681 LVIS_t1167 - 12</sub> Thr tRNA
1143327 1143399 - 73 116332681 LVIS_t1168 - 10</sub> Lys tRNA
1143403 1143475 - 73 116332681 LVIS_t1169 - 13</sub> Val tRNA
1143481 1143599 - 119 116332681 LVIS_r1170 - 5S ribosomal RNA
1143668 1146585 - 2918 116332681 LVIS_r1171 - 23S ribosomal RNA
1146802 1148364 - 1563 116332681 LVIS_r1172 - 16S ribosomal RNA
1277086 1277161 - 76 116332681 LVIS_t1305 - 05</sub> Gln tRNA
1277341 1277414 + 74 116332681 LVIS_t1306 - 04</sub> Glu tRNA
1289472 1289843 + 372 116332681 LVIS_s1317 - tmRNA
1341522 1341609 - 88 116332681 LVIS_t1370 - 08</sub> Ser tRNA
1464858 1464928 - 71 116332681 LVIS_t1492 - 01</sub> Gly tRNA
1482583 1482666 - 84 116332681 LVIS_t1510 - 15</sub> Leu tRNA
1500095 1500179 - 85 116332681 LVIS_t1530 - 15</sub> Leu tRNA
1500214 1500284 - 71 116332681 LVIS_t1531 - 19</sub> Cys tRNA
1500339 1500414 - 76 116332681 LVIS_t1532 - 09</sub> His tRNA
1500428 1500498 - 71 116332681 LVIS_t1533 - 20</sub> Trp tRNA
1500500 1500585 - 86 116332681 LVIS_t1534 - 18</sub> Tyr tRNA
1500590 1500662 - 73 116332681 LVIS_t1535 - 17</sub> Phe tRNA
1500710 1500784 - 75 116332681 LVIS_t1536 - 06</sub> Asp tRNA
1500804 1500876 - 73 116332681 LVIS_t1537 - 13</sub> Val tRNA
1500881 1500953 - 73 116332681 LVIS_t1538 - 04</sub> Glu tRNA
1500967 1501057 - 91 116332681 LVIS_t1539 - 08</sub> Ser tRNA
1501067 1501139 - 73 116332681 LVIS_t1540 - 07</sub> Asn tRNA
1501144 1501262 - 119 116332681 LVIS_r1541 - 5S ribosomal RNA
1501331 1504248 - 2918 116332681 LVIS_r1542 - 23S ribosomal RNA
1504418 1504490 - 73 116332681 LVIS_t1543 - 02</sub> Ala tRNA
1504513 1504587 - 75 116332681 LVIS_t1544 - 14</sub> Ile tRNA
1504667 1506229 - 1563 116332681 LVIS_r1545 - 16S ribosomal RNA
1544596 1544668 - 73 116332681 LVIS_t1579 - 11</sub> Arg tRNA
1664631 1664704 - 74 116332681 LVIS_t1702 - 03</sub> Pro tRNA
1664733 1664806 - 74 116332681 LVIS_t1703 - 03</sub> Pro tRNA
1664841 1664914 - 74 116332681 LVIS_t1704 - 11</sub> Arg tRNA
1664935 1665020 - 86 116332681 LVIS_t1705 - 15</sub> Leu tRNA
1665031 1665102 - 72 116332681 LVIS_t1706 - 01</sub> Gly tRNA
1665129 1665201 - 73 116332681 LVIS_t1707 - 12</sub> Thr tRNA
1665239 1665320 - 82 116332681 LVIS_t1708 - 15</sub> Leu tRNA
1665358 1665430 - 73 116332681 LVIS_t1709 - 13</sub> Val tRNA
1801928 1802000 + 73 116332681 LVIS_t1841 - 02</sub> Ala tRNA
1895453 1895526 - 74 116332681 LVIS_t1937 - 11</sub> Arg tRNA
2091276 2091347 - 72 116332681 LVIS_t2126 - 11</sub> Arg tRNA
2113225 2113296 - 72 116332681 LVIS_t2146 - 05</sub> Gln tRNA