ФЭНДОМ


   LOCUS       NC_008530            1894360 bp    DNA     circular BCT 31-OCT-2006
   DEFINITION  Lactobacillus gasseri ATCC 33323, complete genome.
   ACCESSION   NC_008530
   VERSION     NC_008530.1  GI:116628683
   KEYWORDS    .
   SOURCE      Lactobacillus gasseri ATCC 33323
     ORGANISM  Lactobacillus gasseri ATCC 33323
               Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae;
               Lactobacillus.
   REFERENCE   1  (bases 1 to 1894360)
     AUTHORS   Makarova,K., Slesarev,A., Wolf,Y., Sorokin,A., Mirkin,B.,
               Koonin,E., Pavolv,A., Pavlova,N., Karamychev,V., Polouchine,N.,
               Shakhova,V., Grigoriev,I., Lou,Y., Rohksar,D., Lucas,S., Huang,K.,
               Goldstein,D.M., Hawkins,T., Plengvidhya,V., Welker,D., Hughes,J.,
               Goh,Y., Benson,A., Baldwin,K., Lee,J.-H., Diaz-Muniz,I., Dosti,B.,
               Smeianov,V., Wechter,W., Barabote,R., Lorca,G., Altermann,E.,
               Barrangou,R., Ganesan,B., Xie,Y., Rawsthorne,H., Tamir,D.,
               Parker,C., Breidt,F., Broadbent,J., Hutkins,R., O'Sulllivan,D.,
               Steele,J., Unlu,G., Saier,M., Klaenhammer,T., Richardson,P.,
               Kozyavkin,S., Weimer,B. and Mills,D.
     TITLE     Comparative genomics of the lactic acid bacteria
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15611-15616 (2006)
      PUBMED   17030793
   REFERENCE   2  (bases 1 to 1894360)
     AUTHORS   .
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (24-OCT-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 1894360)
     AUTHORS   Lucas,S., Copeland,A., Detter,J.C., Glavina del Rio,T., Pitluck,S.,
               Grigoriev,I., Rokhsar,D., Slesarev,A., Pavlov,A., Pavlova,N.,
               Karamychev,V., Polouchine,N., Shakhova,V., Kozyavkin,S.,
               Makarova,K., Koonin,E., Mills,D.A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria
               Genome Consortium and Fidelity Systems Inc.
     TITLE     Direct Submission
     JOURNAL   Submitted (22-MAY-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000413.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 2661979
               Source DNA and bacteria available from Todd Klaenhammer
               (trk@unity.ncsu.edu)
               Bacteria also available from ATCC: ATCC 33323
               Contacts: Todd Klaenhammer (trk@unity.ncsu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Annotation done by Kira Makarova and Eugene Koonin
               Finishing done by Fidelity Systems Inc. (Gaithersburg)
               URL -- http://www.fidelitysystems.com  Project Information
               available at: http://genome.jgi-psf.org/mic_home.html
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК Править

Начало Конец Направление Длина PID Ген COG Комментарий
20396 20468 + 73 116628683 LGAS_t0018 - 12</sub> Thr tRNA
23614 23689 + 76 116628683 LGAS_t0023 - 12</sub> Thr tRNA
77784 77856 - 73 116628683 LGAS_t0062 - 10</sub> Lys tRNA
77982 78054 - 73 116628683 LGAS_t0063 - 10</sub> Lys tRNA
213530 213602 + 73 116628683 LGAS_t0178 - 12</sub> Thr tRNA
231930 232000 - 71 116628683 LGAS_t0199 - 01</sub> Gly tRNA
318480 318554 + 75 116628683 LGAS_t0281 - 01</sub> Gly tRNA
318595 318668 + 74 116628683 LGAS_t0282 - 03</sub> Pro tRNA
477570 479148 + 1579 116628683 LGAS_r0449 - 16S ribosomal RNA
479701 482332 + 2632 116628683 LGAS_r0450 - 23S ribosomal RNA
482332 482450 + 119 116628683 LGAS_r0451 - 5S ribosomal RNA
482463 482535 + 73 116628683 LGAS_t0452 - 07</sub> Asn tRNA
482558 482647 + 90 116628683 LGAS_t0453 - 08</sub> Ser tRNA
482764 482835 + 72 116628683 LGAS_t0454 - 04</sub> Glu tRNA
482859 482931 + 73 116628683 LGAS_t0455 - 13</sub> Val tRNA
600613 600685 + 73 116628683 LGAS_t0571 - 11</sub> Arg tRNA
613549 613621 + 73 116628683 LGAS_t0598 - 05</sub> Gln tRNA
614213 614294 + 82 116628683 LGAS_t0600 - Xaa tRNA
653635 653707 + 73 116628683 LGAS_t0660 - 05</sub> Gln tRNA
654299 654380 + 82 116628683 LGAS_t0662 - Xaa tRNA
701626 701699 + 74 116628683 LGAS_t0718 - 11</sub> Arg tRNA
823695 823782 + 88 116628683 LGAS_t0836 - 08</sub> Ser tRNA
1023919 1024248 - 330 116628683 LGAS_r1021 - RNA_RNaseP_classB
1250456 1250528 - 73 116628683 LGAS_t1252 - 05</sub> Gln tRNA
1250535 1250606 - 72 116628683 LGAS_t1253 - 04</sub> Glu tRNA
1264702 1265067 - 366 116628683 LGAS_s1268 - tmRNA
1301986 1302057 + 72 116628683 LGAS_t1310 - Xaa tRNA
1442710 1442793 - 84 116628683 LGAS_t1454 - 15</sub> Leu tRNA
1512369 1512457 - 89 116628683 LGAS_t1519 - 15</sub> Leu tRNA
1531077 1531148 - 72 116628683 LGAS_t1538 - 05</sub> Gln tRNA
1531203 1531284 - 82 116628683 LGAS_t1539 - 18</sub> Tyr tRNA
1535181 1535252 - 72 116628683 LGAS_t1545 - 05</sub> Gln tRNA
1540520 1540592 - 73 116628683 LGAS_t1552 - 12</sub> Thr tRNA
1555766 1555838 - 73 116628683 LGAS_t1563 - 07</sub> Asn tRNA
1555851 1555969 - 119 116628683 LGAS_r1564 - 5S ribosomal RNA
1555970 1558600 - 2631 116628683 LGAS_r1565 - 23S ribosomal RNA
1559153 1560731 - 1579 116628683 LGAS_r1566 - 16S ribosomal RNA
1561127 1561216 - 90 116628683 LGAS_t1567 - 08</sub> Ser tRNA
1561219 1561292 - 74 116628683 LGAS_t1568 - 14</sub> Ile tRNA
1561302 1561375 - 74 116628683 LGAS_t1569 - 01</sub> Gly tRNA
1561393 1561465 - 73 116628683 LGAS_t1570 - 17</sub> Phe tRNA
1561470 1561542 - 73 116628683 LGAS_t1571 - 06</sub> Asp tRNA
1561546 1561619 - 74 116628683 LGAS_t1572 - 16</sub> Met tRNA
1561651 1561724 - 74 116628683 LGAS_t1573 - 16</sub> Met tRNA
1561738 1561811 - 74 116628683 LGAS_t1574 - 16</sub> Met tRNA
1561840 1561913 - 74 116628683 LGAS_t1575 - 03</sub> Pro tRNA
1561919 1561992 - 74 116628683 LGAS_t1576 - 11</sub> Arg tRNA
1562002 1562087 - 86 116628683 LGAS_t1577 - 15</sub> Leu tRNA
1562100 1562171 - 72 116628683 LGAS_t1578 - 01</sub> Gly tRNA
1562191 1562263 - 73 116628683 LGAS_t1579 - 12</sub> Thr tRNA
1562265 1562349 - 85 116628683 LGAS_t1580 - 15</sub> Leu tRNA
1562369 1562441 - 73 116628683 LGAS_t1581 - 10</sub> Lys tRNA
1562444 1562516 - 73 116628683 LGAS_t1582 - 13</sub> Val tRNA
1562521 1562639 - 119 116628683 LGAS_r1583 - 5S ribosomal RNA
1562640 1565270 - 2631 116628683 LGAS_r1584 - 23S ribosomal RNA
1565823 1567401 - 1579 116628683 LGAS_r1585 - 16S ribosomal RNA
1573405 1573488 - 84 116628683 LGAS_t1590 - 15</sub> Leu tRNA
1573520 1573590 - 71 116628683 LGAS_t1591 - 19</sub> Cys tRNA
1573611 1573682 - 72 116628683 LGAS_t1592 - 05</sub> Gln tRNA
1573687 1573762 - 76 116628683 LGAS_t1593 - 09</sub> His tRNA
1573777 1573847 - 71 116628683 LGAS_t1594 - 20</sub> Trp tRNA
1573855 1573936 - 82 116628683 LGAS_t1595 - 18</sub> Tyr tRNA
1573941 1574013 - 73 116628683 LGAS_t1596 - 17</sub> Phe tRNA
1574018 1574090 - 73 116628683 LGAS_t1597 - 06</sub> Asp tRNA
1574094 1574167 - 74 116628683 LGAS_t1598 - 16</sub> Met tRNA
1574175 1574265 - 91 116628683 LGAS_t1599 - 08</sub> Ser tRNA
1574291 1574362 - 72 116628683 LGAS_t1600 - 04</sub> Glu tRNA
1575301 1575390 - 90 116628683 LGAS_t1602 - 08</sub> Ser tRNA
1575393 1575466 - 74 116628683 LGAS_t1603 - 14</sub> Ile tRNA
1575476 1575549 - 74 116628683 LGAS_t1604 - 01</sub> Gly tRNA
1575567 1575639 - 73 116628683 LGAS_t1605 - 17</sub> Phe tRNA
1575644 1575716 - 73 116628683 LGAS_t1606 - 06</sub> Asp tRNA
1575720 1575793 - 74 116628683 LGAS_t1607 - 16</sub> Met tRNA
1575825 1575898 - 74 116628683 LGAS_t1608 - 16</sub> Met tRNA
1575912 1575985 - 74 116628683 LGAS_t1609 - 16</sub> Met tRNA
1576014 1576087 - 74 116628683 LGAS_t1610 - 03</sub> Pro tRNA
1576093 1576166 - 74 116628683 LGAS_t1611 - 11</sub> Arg tRNA
1576176 1576261 - 86 116628683 LGAS_t1612 - 15</sub> Leu tRNA
1576274 1576345 - 72 116628683 LGAS_t1613 - 01</sub> Gly tRNA
1576365 1576437 - 73 116628683 LGAS_t1614 - 12</sub> Thr tRNA
1576439 1576523 - 85 116628683 LGAS_t1615 - 15</sub> Leu tRNA
1576543 1576615 - 73 116628683 LGAS_t1616 - 10</sub> Lys tRNA
1576618 1576690 - 73 116628683 LGAS_t1617 - 13</sub> Val tRNA
1576695 1576813 - 119 116628683 LGAS_r1618 - 5S ribosomal RNA
1576814 1579444 - 2631 116628683 LGAS_r1619 - 23S ribosomal RNA
1579997 1581575 - 1579 116628683 LGAS_r1620 - 16S ribosomal RNA
1783066 1783138 - 73 116628683 LGAS_t1796 - 07</sub> Asn tRNA
1783151 1783269 - 119 116628683 LGAS_r1797 - 5S ribosomal RNA
1783270 1785900 - 2631 116628683 LGAS_r1798 - 23S ribosomal RNA
1786359 1786431 - 73 116628683 LGAS_t1799 - 02</sub> Ala tRNA
1786465 1786538 - 74 116628683 LGAS_t1800 - 14</sub> Ile tRNA
1786679 1788257 - 1579 116628683 LGAS_r1801 - 16S ribosomal RNA
1788578 1788653 - 76 116628683 LGAS_t1802 - 07</sub> Asn tRNA
1788666 1788784 - 119 116628683 LGAS_r1803 - 5S ribosomal RNA
1788785 1791415 - 2631 116628683 LGAS_r1804 - 23S ribosomal RNA
1791874 1791946 - 73 116628683 LGAS_t1805 - 02</sub> Ala tRNA
1791980 1792053 - 74 116628683 LGAS_t1806 - 14</sub> Ile tRNA
1792194 1793772 - 1579 116628683 LGAS_r1807 - 16S ribosomal RNA