ФЭНДОМ


   LOCUS       NC_008578            2443540 bp    DNA     circular BCT 22-NOV-2006
   DEFINITION  Acidothermus cellulolyticus 11B, complete genome.
   ACCESSION   NC_008578
   VERSION     NC_008578.1  GI:117927211
   KEYWORDS    .
   SOURCE      Acidothermus cellulolyticus 11B
     ORGANISM  Acidothermus cellulolyticus 11B
               Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
               Frankineae; Acidothermaceae; Acidothermus.
   REFERENCE   1  (bases 1 to 2443540)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Zharchuk,I., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Mikhailova,N., Berry,A.M., Adney,W.S., Normand,P.,
               Leu,D., Pujic,P. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Acidothermus cellulolyticus 11B
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 2443540)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (13-NOV-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2443540)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Zharchuk,I., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Mikhailova,N., Berry,A.M., Adney,W.S., Normand,P.,
               Leu,D., Pujic,P. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (27-OCT-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000481.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000235
               Source DNA and bacteria available from Alison M. Berry
               (amberry@ucdavis.edu)
               Contacts: Alison M. Berry (amberry@ucdavis.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-PGF
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК Править

Начало Конец Направление Длина PID Ген COG Комментарий
10111 10184 + 74 117927211 Acel_R0001 - 14</sub> Ile tRNA
10372 10444 + 73 117927211 Acel_R0002 - 02</sub> Ala tRNA
24698 24783 + 86 117927211 Acel_R0003 - 15</sub> Leu tRNA
40835 40924 + 90 117927211 Acel_R0004 - 08</sub> Ser tRNA
41078 41150 + 73 117927211 Acel_R0005 - 11</sub> Arg tRNA
89585 89657 + 73 117927211 Acel_R0007 - 12</sub> Thr tRNA
160721 160793 - 73 117927211 Acel_R0009 - 11</sub> Arg tRNA
179159 179235 - 77 117927211 Acel_R0010 - 02</sub> Ala tRNA
307544 307629 + 86 117927211 Acel_R0011 - 18</sub> Tyr tRNA
308349 308424 + 76 117927211 Acel_R0012 - 12</sub> Thr tRNA
308433 308506 + 74 117927211 Acel_R0013 - 16</sub> Met tRNA
313372 313444 + 73 117927211 Acel_R0014 - 20</sub> Trp tRNA
509883 509956 + 74 117927211 Acel_R0015 - 16</sub> Met tRNA
677124 677195 - 72 117927211 Acel_R0016 - 11</sub> Arg tRNA
783342 783416 + 75 117927211 Acel_R0017 - 05</sub> Gln tRNA
783484 783559 + 76 117927211 Acel_R0018 - 04</sub> Glu tRNA
842997 843069 + 73 117927211 Acel_R0019 - 02</sub> Ala tRNA
893343 893418 + 76 117927211 Acel_R0020 - 07</sub> Asn tRNA
895201 895275 + 75 117927211 Acel_R0021 - Xaa tRNA
921140 921213 + 74 117927211 Acel_R0022 - 16</sub> Met tRNA
959541 959642 + 102 117927211 Acel_R0023 - RNA component of RNaseP
974815 974886 + 72 117927211 Acel_R0024 - 13</sub> Val tRNA
999565 999748 + 184 117927211 Acel_R0025 - RNA component of RNaseP
1069182 1069310 + 129 117927211 Acel_R0027 -
1195798 1195870 - 73 117927211 Acel_R0029 - 15</sub> Leu tRNA
1294229 1294313 - 85 117927211 Acel_R0030 - 15</sub> Leu tRNA
1372762 1372838 - 77 117927211 Acel_R0033 - 03</sub> Pro tRNA
1394058 1394174 - 117 117927211 Acel_R0034 - 5S ribosomal RNA
1394248 1397363 - 3116 117927211 Acel_R0035 - 23S ribosomal RNA
1397655 1399163 - 1509 117927211 Acel_R0036 - 16S ribosomal RNA
1523649 1523720 - 72 117927211 Acel_R0038 - 13</sub> Val tRNA
1524762 1524834 + 73 117927211 Acel_R0039 - 01</sub> Gly tRNA
1524883 1524954 + 72 117927211 Acel_R0040 - 19</sub> Cys tRNA
1525000 1525074 + 75 117927211 Acel_R0041 - 13</sub> Val tRNA
1796880 1796952 - 73 117927211 Acel_R0042 - 03</sub> Pro tRNA
1797034 1797104 + 71 117927211 Acel_R0043 - 01</sub> Gly tRNA
1824619 1824691 + 73 117927211 Acel_R0044 - 11</sub> Arg tRNA
1855719 1855794 + 76 117927211 Acel_R0045 - 09</sub> His tRNA
1861376 1861448 + 73 117927211 Acel_R0046 - 10</sub> Lys tRNA
1894564 1894636 + 73 117927211 Acel_R0047 - 15</sub> Leu tRNA
1948386 1948761 - 376 117927211 Acel_R0050 - tmRNA
2147460 2147532 - 73 117927211 Acel_R0053 - 15</sub> Leu tRNA
2206752 2206822 - 71 117927211 Acel_R0054 - 05</sub> Gln tRNA
2229255 2229359 + 105 117927211 Acel_R0055 -
2230555 2230630 - 76 117927211 Acel_R0056 - 12</sub> Thr tRNA
2281581 2281657 - 77 117927211 Acel_R0057 - 03</sub> Pro tRNA
2292429 2292519 - 91 117927211 Acel_R0058 - SRP RNA; RNA component of signal recognition particle
2292585 2292671 + 87 117927211 Acel_R0059 - 08</sub> Ser tRNA
2293394 2293483 - 90 117927211 Acel_R0060 - 08</sub> Ser tRNA
2336246 2336318 - 73 117927211 Acel_R0061 - 10</sub> Lys tRNA
2339526 2339598 + 73 117927211 Acel_R0062 - 04</sub> Glu tRNA
2339683 2339760 + 78 117927211 Acel_R0063 - 06</sub> Asp tRNA
2339803 2339879 + 77 117927211 Acel_R0064 - 17</sub> Phe tRNA
2372859 2373007 - 149 117927211 Acel_R0065 -
2374948 2375032 + 85 117927211 Acel_R0066 - 08</sub> Ser tRNA
2389254 2389324 - 71 117927211 Acel_R0067 - 01</sub> Gly tRNA