ФЭНДОМ


   LOCUS       NC_009077            6048425 bp    DNA     circular BCT 01-MAR-2007
   DEFINITION  Mycobacterium sp. JLS, complete genome.
   ACCESSION   NC_009077
   VERSION     NC_009077.1  GI:126432613
   KEYWORDS    .
   SOURCE      Mycobacterium sp. JLS
     ORGANISM  Mycobacterium sp. JLS
               Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
               Corynebacterineae; Mycobacteriaceae; Mycobacterium.
   REFERENCE   1  (bases 1 to 6048425)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Miller,C.D.,
               Anderson,A.J., Sims,R.C. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Mycobacterium sp. JLS
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 6048425)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Miller,C.D.,
               Anderson,A.J., Sims,R.C. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (20-FEB-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   REFERENCE   3  (bases 1 to 6048425)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (12-APR-2002) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000580.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000378
               Source DNA and bacteria available from Charles Miller
               (cdmiller@biology.usu.edu)
               Contacts: Charles Miller (cdmiller@biology.usu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376)
               Additional Note: There is a 21kb repeat at 1513668-1544927 in the
               final assembly that possibly sometimes inserts itself at location
               5440327 in the chromosome.
               COMPLETENESS: full length.


Расположение РНК Править

Начало Конец Направление Длина PID Ген COG Комментарий
11963 12036 + 74 126432613 Mjls_R0001 - 14</sub> Ile tRNA
12198 12273 + 76 126432613 Mjls_R0002 - 02</sub> Ala tRNA
25626 25708 + 83 126432613 Mjls_R0003 - 15</sub> Leu tRNA
461457 461530 - 74 126432613 Mjls_R0004 - 01</sub> Gly tRNA
819391 819476 + 86 126432613 Mjls_R0005 - 18</sub> Tyr tRNA
1029962 1030034 + 73 126432613 Mjls_R0006 - 12</sub> Thr tRNA
1030066 1030139 + 74 126432613 Mjls_R0007 - 16</sub> Met tRNA
1031979 1032054 + 76 126432613 Mjls_R0008 - 20</sub> Trp tRNA
1580692 1580768 + 77 126432613 Mjls_R0009 - 16</sub> Met tRNA
1691136 1691500 + 365 126432613 Mjls_R0010 -
1804201 1804273 + 73 126432613 Mjls_R0011 - 02</sub> Ala tRNA
2005329 2005400 + 72 126432613 Mjls_R0012 - 05</sub> Gln tRNA
2005463 2005535 + 73 126432613 Mjls_R0013 - 04</sub> Glu tRNA
2369681 2369755 - 75 126432613 Mjls_R0014 - 13</sub> Val tRNA
2369769 2369842 - 74 126432613 Mjls_R0015 - 19</sub> Cys tRNA
2369866 2369941 - 76 126432613 Mjls_R0016 - 01</sub> Gly tRNA
2370192 2370266 + 75 126432613 Mjls_R0017 - 13</sub> Val tRNA
3060447 3060520 - 74 126432613 Mjls_R0018 - 03</sub> Pro tRNA
3093385 3093498 - 114 126432613 Mjls_R0019 - 5S ribosomal RNA
3093615 3096761 - 3147 126432613 Mjls_R0020 - 23S ribosomal RNA
3097193 3098707 - 1515 126432613 Mjls_R0021 - 16S ribosomal RNA
3149630 3149700 - 71 126432613 Mjls_R0022 - 19</sub> Cys tRNA
3173250 3173326 + 77 126432613 Mjls_R0023 - 15</sub> Leu tRNA
3329732 3329817 + 86 126432613 Mjls_R0024 - 15</sub> Leu tRNA
3343635 3343714 + 80 126432613 Mjls_R0025 - 10</sub> Lys tRNA
3510686 3511037 - 352 126432613 Mjls_R0026 -
3532848 3532919 - 72 126432613 Mjls_R0027 - 13</sub> Val tRNA
3609627 3609703 - 77 126432613 Mjls_R0028 - 16</sub> Met tRNA
3624910 3624982 - 73 126432613 Mjls_R0029 - 07</sub> Asn tRNA
3780037 3780113 - 77 126432613 Mjls_R0030 - 03</sub> Pro tRNA
3780254 3780327 + 74 126432613 Mjls_R0031 - 01</sub> Gly tRNA
3833896 3833968 + 73 126432613 Mjls_R0032 - 11</sub> Arg tRNA
3854455 3854530 + 76 126432613 Mjls_R0033 - 09</sub> His tRNA
3855965 3856040 + 76 126432613 Mjls_R0034 - 10</sub> Lys tRNA
4046705 4046788 - 84 126432613 Mjls_R0035 - 15</sub> Leu tRNA
4081140 4081253 - 114 126432613 Mjls_R0036 - 5S ribosomal RNA
4081378 4084517 - 3140 126432613 Mjls_R0037 - 23S ribosomal RNA
4084949 4086463 - 1515 126432613 Mjls_R0038 - 16S ribosomal RNA
4114021 4114096 + 76 126432613 Mjls_R0039 - 11</sub> Arg tRNA
4676639 4676712 - 74 126432613 Mjls_R0040 - 15</sub> Leu tRNA
4861113 4861187 + 75 126432613 Mjls_R0041 - 05</sub> Gln tRNA
4900312 4900384 - 73 126432613 Mjls_R0042 - 02</sub> Ala tRNA
5005474 5005546 + 73 126432613 Mjls_R0043 - 11</sub> Arg tRNA
5134452 5134528 - 77 126432613 Mjls_R0044 - 17</sub> Phe tRNA
5134571 5134647 - 77 126432613 Mjls_R0045 - 06</sub> Asp tRNA
5134681 5134753 - 73 126432613 Mjls_R0046 - 04</sub> Glu tRNA
5134874 5134949 + 76 126432613 Mjls_R0047 - 10</sub> Lys tRNA
5216333 5216407 + 75 126432613 Mjls_R0048 - 12</sub> Thr tRNA
5427633 5427705 - 73 126432613 Mjls_R0049 - 12</sub> Thr tRNA
5463650 5463723 + 74 126432613 Mjls_R0050 - 03</sub> Pro tRNA
5529822 5529914 - 93 126432613 Mjls_R0051 - SRP RNA; RNA component of signal recognition particle
5529988 5530072 + 85 126432613 Mjls_R0052 - 08</sub> Ser tRNA
5594557 5594647 - 91 126432613 Mjls_R0053 - 08</sub> Ser tRNA
5612742 5612814 - 73 126432613 Mjls_R0054 - 11</sub> Arg tRNA
5612853 5612944 - 92 126432613 Mjls_R0055 - 08</sub> Ser tRNA
5616359 5616445 - 87 126432613 Mjls_R0056 - 08</sub> Ser tRNA
5846540 5846634 + 95 126432613 Mjls_R0057 - Sec tRNA