ФЭНДОМ


   LOCUS       NC_009253            3608104 bp    DNA     circular BCT 31-MAR-2007
   DEFINITION  Desulfotomaculum reducens MI-1, complete genome.
   ACCESSION   NC_009253
   VERSION     NC_009253.1  GI:134297881
   KEYWORDS    .
   SOURCE      Desulfotomaculum reducens MI-1
     ORGANISM  Desulfotomaculum reducens MI-1
               Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae;
               Desulfotomaculum.
   REFERENCE   1  (bases 1 to 3608104)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
               Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Tebo,B.M. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Desulfotomaculum reducens MI-1
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3608104)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (30-MAR-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3608104)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
               Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (14-MAR-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000612.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000266
               Source DNA and bacteria available from Bradley M. Tebo
               (tebo@ebs.ogi.edu)
               Contacts: Bradley M. Tebo (tebo@ebs.ogi.edu)
                    Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК Править

Начало Конец Направление Длина PID Ген COG Комментарий
10048 11659 + 1612 134297881 Dred_R0001 - 16S ribosomal RNA
11738 11814 + 77 134297881 Dred_R0002 - 14</sub> Ile tRNA
11832 11907 + 76 134297881 Dred_R0003 - 02</sub> Ala tRNA
12068 15659 + 3592 134297881 Dred_R0004 - 23S ribosomal RNA
15847 15963 + 117 134297881 Dred_R0005 - 5S ribosomal RNA
24602 24691 + 90 134297881 Dred_R0006 - 08</sub> Ser tRNA
24708 24801 + 94 134297881 Dred_R0007 - 08</sub> Ser tRNA
25698 25774 + 77 134297881 Dred_R0008 - 11</sub> Arg tRNA
25832 25908 + 77 134297881 Dred_R0009 - 11</sub> Arg tRNA
25960 26036 + 77 134297881 Dred_R0010 - 11</sub> Arg tRNA
26520 26611 + 92 134297881 Dred_R0011 - 08</sub> Ser tRNA
49815 49906 + 92 134297881 Dred_R0012 - 08</sub> Ser tRNA
50041 50141 + 101 134297881 Dred_R0013 - SRP RNA; RNA component of signal recognition particle
184639 186250 + 1612 134297881 Dred_R0014 - 16S ribosomal RNA
186329 186405 + 77 134297881 Dred_R0015 - 14</sub> Ile tRNA
186423 186498 + 76 134297881 Dred_R0016 - 02</sub> Ala tRNA
186659 190250 + 3592 134297881 Dred_R0017 - 23S ribosomal RNA
190424 190540 + 117 134297881 Dred_R0018 - 5S ribosomal RNA
190548 190622 + 75 134297881 Dred_R0019 - 07</sub> Asn tRNA
190811 190927 + 117 134297881 Dred_R0020 - 5S ribosomal RNA
190935 191009 + 75 134297881 Dred_R0021 - 07</sub> Asn tRNA
213648 213723 + 76 134297881 Dred_R0022 - 12</sub> Thr tRNA
213733 213818 + 86 134297881 Dred_R0023 - 18</sub> Tyr tRNA
213886 213961 + 76 134297881 Dred_R0024 - 16</sub> Met tRNA
213965 214040 + 76 134297881 Dred_R0025 - 12</sub> Thr tRNA
214049 214125 + 77 134297881 Dred_R0026 - 16</sub> Met tRNA
361113 361317 + 205 134297881 Dred_R0027 - 5S ribosomal RNA
392461 392536 + 76 134297881 Dred_R0028 - 05</sub> Gln tRNA
392546 392621 + 76 134297881 Dred_R0029 - 10</sub> Lys tRNA
406914 406986 + 73 134297881 Dred_R0030 - 10</sub> Lys tRNA
441378 442989 + 1612 134297881 Dred_R0031 - 16S ribosomal RNA
443221 446812 + 3592 134297881 Dred_R0032 - 23S ribosomal RNA
447000 447116 + 117 134297881 Dred_R0033 - 5S ribosomal RNA
502748 502823 - 76 134297881 Dred_R0034 - 16</sub> Met tRNA
531315 531391 + 77 134297881 Dred_R0035 - 06</sub> Asp tRNA
531400 531475 + 76 134297881 Dred_R0036 - 17</sub> Phe tRNA
531492 531566 + 75 134297881 Dred_R0037 - 01</sub> Gly tRNA
531579 531652 + 74 134297881 Dred_R0038 - 19</sub> Cys tRNA
533450 533525 + 76 134297881 Dred_R0039 - 17</sub> Phe tRNA
533543 533617 + 75 134297881 Dred_R0040 - 01</sub> Gly tRNA
533630 533704 + 75 134297881 Dred_R0041 - 19</sub> Cys tRNA
534781 534855 + 75 134297881 Dred_R0042 - 01</sub> Gly tRNA
534865 534941 + 77 134297881 Dred_R0043 - 06</sub> Asp tRNA
535013 535099 + 87 134297881 Dred_R0044 - 15</sub> Leu tRNA
1258506 1258582 + 77 134297881 Dred_R0045 - 03</sub> Pro tRNA
1308162 1308232 + 71 134297881 Dred_R0046 - Xaa tRNA
1332694 1334305 + 1612 134297881 Dred_R0047 - 16S ribosomal RNA
1334536 1338127 + 3592 134297881 Dred_R0048 - 23S ribosomal RNA
1338315 1338431 + 117 134297881 Dred_R0049 - 5S ribosomal RNA
1345371 1346982 + 1612 134297881 Dred_R0050 - 16S ribosomal RNA
1347398 1350989 + 3592 134297881 Dred_R0051 - 23S ribosomal RNA
1351177 1351293 + 117 134297881 Dred_R0052 - 5S ribosomal RNA
1380461 1380767 + 307 134297881 Dred_R0053 - RNase P
1380879 1380954 + 76 134297881 Dred_R0054 - 02</sub> Ala tRNA
1721624 1721708 - 85 134297881 Dred_R0055 - 15</sub> Leu tRNA
1733002 1733087 - 86 134297881 Dred_R0056 - 03</sub> Pro tRNA
1746823 1746899 + 77 134297881 Dred_R0057 - 13</sub> Val tRNA
1964347 1964422 + 76 134297881 Dred_R0058 - 20</sub> Trp tRNA
2219505 2219709 - 205 134297881 Dred_R0059 - 5S ribosomal RNA
2219897 2223488 - 3592 134297881 Dred_R0060 - 23S ribosomal RNA
2223904 2225515 - 1612 134297881 Dred_R0061 - 16S ribosomal RNA
2296928 2297004 - 77 134297881 Dred_R0062 - 03</sub> Pro tRNA
2319835 2319911 + 77 134297881 Dred_R0063 - 03</sub> Pro tRNA
2349174 2349249 + 76 134297881 Dred_R0064 - 04</sub> Glu tRNA
2349256 2349341 + 86 134297881 Dred_R0065 - 18</sub> Tyr tRNA
2349345 2349419 + 75 134297881 Dred_R0066 - 05</sub> Gln tRNA
2350024 2350110 + 87 134297881 Dred_R0067 - 15</sub> Leu tRNA
2350260 2350346 + 87 134297881 Dred_R0068 - 15</sub> Leu tRNA
2373130 2373227 - 98 134297881 Dred_R0069 - Sec tRNA
2374959 2375033 - 75 134297881 Dred_R0070 - 01</sub> Gly tRNA
2500132 2500218 + 87 134297881 Dred_R0071 - 15</sub> Leu tRNA
2679493 2679568 - 76 134297881 Dred_R0072 - 13</sub> Val tRNA
2679579 2679654 - 76 134297881 Dred_R0073 - 04</sub> Glu tRNA
2679683 2679757 - 75 134297881 Dred_R0074 - 16</sub> Met tRNA
2679764 2679838 - 75 134297881 Dred_R0075 - 07</sub> Asn tRNA
2747153 2747269 - 117 134297881 Dred_R0076 - 5S ribosomal RNA
2747457 2751048 - 3592 134297881 Dred_R0077 - 23S ribosomal RNA
2751280 2752891 - 1612 134297881 Dred_R0078 - 16S ribosomal RNA
2793540 2793624 - 85 134297881 Dred_R0079 - 15</sub> Leu tRNA
2793635 2793710 - 76 134297881 Dred_R0080 - 10</sub> Lys tRNA
2793719 2793793 - 75 134297881 Dred_R0081 - 05</sub> Gln tRNA
2793813 2793889 - 77 134297881 Dred_R0082 - 09</sub> His tRNA
2807849 2807924 + 76 134297881 Dred_R0083 - 16</sub> Met tRNA
2808591 2808667 + 77 134297881 Dred_R0084 - 11</sub> Arg tRNA
2907452 2907525 - 74 134297881 Dred_R0085 - 01</sub> Gly tRNA
3032244 3032318 - 75 134297881 Dred_R0086 - 11</sub> Arg tRNA
3165251 3165326 - 76 134297881 Dred_R0087 - 12</sub> Thr tRNA
3165433 3165508 - 76 134297881 Dred_R0088 - 12</sub> Thr tRNA
3165513 3165588 - 76 134297881 Dred_R0089 - 13</sub> Val tRNA
3166112 3166187 + 76 134297881 Dred_R0090 - 13</sub> Val tRNA
3166197 3166273 + 77 134297881 Dred_R0091 - 06</sub> Asp tRNA
3190893 3191009 - 117 134297881 Dred_R0092 - 5S ribosomal RNA
3191197 3194788 - 3592 134297881 Dred_R0093 - 23S ribosomal RNA
3195019 3196630 - 1612 134297881 Dred_R0094 - 16S ribosomal RNA
3241871 3242217 - 347 134297881 Dred_R0095 - tmRNA
3580478 3580552 - 75 134297881 Dred_R0096 - 01</sub> Gly tRNA
3580614 3580689 - 76 134297881 Dred_R0097 - 04</sub> Glu tRNA
3580705 3580780 - 76 134297881 Dred_R0098 - 10</sub> Lys tRNA
3580816 3580891 - 76 134297881 Dred_R0099 - 04</sub> Glu tRNA
3580906 3580981 - 76 134297881 Dred_R0100 - 10</sub> Lys tRNA