LOCUS NC_009253 3608104 bp DNA circular BCT 31-MAR-2007
DEFINITION Desulfotomaculum reducens MI-1, complete genome.
ACCESSION NC_009253
VERSION NC_009253.1 GI:134297881
KEYWORDS .
SOURCE Desulfotomaculum reducens MI-1
ORGANISM Desulfotomaculum reducens MI-1
Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae;
Desulfotomaculum.
REFERENCE 1 (bases 1 to 3608104)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Tebo,B.M. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Desulfotomaculum reducens MI-1
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3608104)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3608104)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2007) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000612.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4000266
Source DNA and bacteria available from Bradley M. Tebo
(tebo@ebs.ogi.edu)
Contacts: Bradley M. Tebo (tebo@ebs.ogi.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК[]
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 10048 | 11659 | + | 1612 | 134297881 | Dred_R0001 | - | 16S ribosomal RNA |
| 11738 | 11814 | + | 77 | 134297881 | Dred_R0002 | - | 14 Ile tRNA |
| 11832 | 11907 | + | 76 | 134297881 | Dred_R0003 | - | 02 Ala tRNA |
| 12068 | 15659 | + | 3592 | 134297881 | Dred_R0004 | - | 23S ribosomal RNA |
| 15847 | 15963 | + | 117 | 134297881 | Dred_R0005 | - | 5S ribosomal RNA |
| 24602 | 24691 | + | 90 | 134297881 | Dred_R0006 | - | 08 Ser tRNA |
| 24708 | 24801 | + | 94 | 134297881 | Dred_R0007 | - | 08 Ser tRNA |
| 25698 | 25774 | + | 77 | 134297881 | Dred_R0008 | - | 11 Arg tRNA |
| 25832 | 25908 | + | 77 | 134297881 | Dred_R0009 | - | 11 Arg tRNA |
| 25960 | 26036 | + | 77 | 134297881 | Dred_R0010 | - | 11 Arg tRNA |
| 26520 | 26611 | + | 92 | 134297881 | Dred_R0011 | - | 08 Ser tRNA |
| 49815 | 49906 | + | 92 | 134297881 | Dred_R0012 | - | 08 Ser tRNA |
| 50041 | 50141 | + | 101 | 134297881 | Dred_R0013 | - | SRP RNA; RNA component of signal recognition particle |
| 184639 | 186250 | + | 1612 | 134297881 | Dred_R0014 | - | 16S ribosomal RNA |
| 186329 | 186405 | + | 77 | 134297881 | Dred_R0015 | - | 14 Ile tRNA |
| 186423 | 186498 | + | 76 | 134297881 | Dred_R0016 | - | 02 Ala tRNA |
| 186659 | 190250 | + | 3592 | 134297881 | Dred_R0017 | - | 23S ribosomal RNA |
| 190424 | 190540 | + | 117 | 134297881 | Dred_R0018 | - | 5S ribosomal RNA |
| 190548 | 190622 | + | 75 | 134297881 | Dred_R0019 | - | 07 Asn tRNA |
| 190811 | 190927 | + | 117 | 134297881 | Dred_R0020 | - | 5S ribosomal RNA |
| 190935 | 191009 | + | 75 | 134297881 | Dred_R0021 | - | 07 Asn tRNA |
| 213648 | 213723 | + | 76 | 134297881 | Dred_R0022 | - | 12 Thr tRNA |
| 213733 | 213818 | + | 86 | 134297881 | Dred_R0023 | - | 18 Tyr tRNA |
| 213886 | 213961 | + | 76 | 134297881 | Dred_R0024 | - | 16 Met tRNA |
| 213965 | 214040 | + | 76 | 134297881 | Dred_R0025 | - | 12 Thr tRNA |
| 214049 | 214125 | + | 77 | 134297881 | Dred_R0026 | - | 16 Met tRNA |
| 361113 | 361317 | + | 205 | 134297881 | Dred_R0027 | - | 5S ribosomal RNA |
| 392461 | 392536 | + | 76 | 134297881 | Dred_R0028 | - | 05 Gln tRNA |
| 392546 | 392621 | + | 76 | 134297881 | Dred_R0029 | - | 10 Lys tRNA |
| 406914 | 406986 | + | 73 | 134297881 | Dred_R0030 | - | 10 Lys tRNA |
| 441378 | 442989 | + | 1612 | 134297881 | Dred_R0031 | - | 16S ribosomal RNA |
| 443221 | 446812 | + | 3592 | 134297881 | Dred_R0032 | - | 23S ribosomal RNA |
| 447000 | 447116 | + | 117 | 134297881 | Dred_R0033 | - | 5S ribosomal RNA |
| 502748 | 502823 | - | 76 | 134297881 | Dred_R0034 | - | 16 Met tRNA |
| 531315 | 531391 | + | 77 | 134297881 | Dred_R0035 | - | 06 Asp tRNA |
| 531400 | 531475 | + | 76 | 134297881 | Dred_R0036 | - | 17 Phe tRNA |
| 531492 | 531566 | + | 75 | 134297881 | Dred_R0037 | - | 01 Gly tRNA |
| 531579 | 531652 | + | 74 | 134297881 | Dred_R0038 | - | 19 Cys tRNA |
| 533450 | 533525 | + | 76 | 134297881 | Dred_R0039 | - | 17 Phe tRNA |
| 533543 | 533617 | + | 75 | 134297881 | Dred_R0040 | - | 01 Gly tRNA |
| 533630 | 533704 | + | 75 | 134297881 | Dred_R0041 | - | 19 Cys tRNA |
| 534781 | 534855 | + | 75 | 134297881 | Dred_R0042 | - | 01 Gly tRNA |
| 534865 | 534941 | + | 77 | 134297881 | Dred_R0043 | - | 06 Asp tRNA |
| 535013 | 535099 | + | 87 | 134297881 | Dred_R0044 | - | 15 Leu tRNA |
| 1258506 | 1258582 | + | 77 | 134297881 | Dred_R0045 | - | 03 Pro tRNA |
| 1308162 | 1308232 | + | 71 | 134297881 | Dred_R0046 | - | Xaa tRNA |
| 1332694 | 1334305 | + | 1612 | 134297881 | Dred_R0047 | - | 16S ribosomal RNA |
| 1334536 | 1338127 | + | 3592 | 134297881 | Dred_R0048 | - | 23S ribosomal RNA |
| 1338315 | 1338431 | + | 117 | 134297881 | Dred_R0049 | - | 5S ribosomal RNA |
| 1345371 | 1346982 | + | 1612 | 134297881 | Dred_R0050 | - | 16S ribosomal RNA |
| 1347398 | 1350989 | + | 3592 | 134297881 | Dred_R0051 | - | 23S ribosomal RNA |
| 1351177 | 1351293 | + | 117 | 134297881 | Dred_R0052 | - | 5S ribosomal RNA |
| 1380461 | 1380767 | + | 307 | 134297881 | Dred_R0053 | - | RNase P |
| 1380879 | 1380954 | + | 76 | 134297881 | Dred_R0054 | - | 02 Ala tRNA |
| 1721624 | 1721708 | - | 85 | 134297881 | Dred_R0055 | - | 15 Leu tRNA |
| 1733002 | 1733087 | - | 86 | 134297881 | Dred_R0056 | - | 03 Pro tRNA |
| 1746823 | 1746899 | + | 77 | 134297881 | Dred_R0057 | - | 13 Val tRNA |
| 1964347 | 1964422 | + | 76 | 134297881 | Dred_R0058 | - | 20 Trp tRNA |
| 2219505 | 2219709 | - | 205 | 134297881 | Dred_R0059 | - | 5S ribosomal RNA |
| 2219897 | 2223488 | - | 3592 | 134297881 | Dred_R0060 | - | 23S ribosomal RNA |
| 2223904 | 2225515 | - | 1612 | 134297881 | Dred_R0061 | - | 16S ribosomal RNA |
| 2296928 | 2297004 | - | 77 | 134297881 | Dred_R0062 | - | 03 Pro tRNA |
| 2319835 | 2319911 | + | 77 | 134297881 | Dred_R0063 | - | 03 Pro tRNA |
| 2349174 | 2349249 | + | 76 | 134297881 | Dred_R0064 | - | 04 Glu tRNA |
| 2349256 | 2349341 | + | 86 | 134297881 | Dred_R0065 | - | 18 Tyr tRNA |
| 2349345 | 2349419 | + | 75 | 134297881 | Dred_R0066 | - | 05 Gln tRNA |
| 2350024 | 2350110 | + | 87 | 134297881 | Dred_R0067 | - | 15 Leu tRNA |
| 2350260 | 2350346 | + | 87 | 134297881 | Dred_R0068 | - | 15 Leu tRNA |
| 2373130 | 2373227 | - | 98 | 134297881 | Dred_R0069 | - | Sec tRNA |
| 2374959 | 2375033 | - | 75 | 134297881 | Dred_R0070 | - | 01 Gly tRNA |
| 2500132 | 2500218 | + | 87 | 134297881 | Dred_R0071 | - | 15 Leu tRNA |
| 2679493 | 2679568 | - | 76 | 134297881 | Dred_R0072 | - | 13 Val tRNA |
| 2679579 | 2679654 | - | 76 | 134297881 | Dred_R0073 | - | 04 Glu tRNA |
| 2679683 | 2679757 | - | 75 | 134297881 | Dred_R0074 | - | 16 Met tRNA |
| 2679764 | 2679838 | - | 75 | 134297881 | Dred_R0075 | - | 07 Asn tRNA |
| 2747153 | 2747269 | - | 117 | 134297881 | Dred_R0076 | - | 5S ribosomal RNA |
| 2747457 | 2751048 | - | 3592 | 134297881 | Dred_R0077 | - | 23S ribosomal RNA |
| 2751280 | 2752891 | - | 1612 | 134297881 | Dred_R0078 | - | 16S ribosomal RNA |
| 2793540 | 2793624 | - | 85 | 134297881 | Dred_R0079 | - | 15 Leu tRNA |
| 2793635 | 2793710 | - | 76 | 134297881 | Dred_R0080 | - | 10 Lys tRNA |
| 2793719 | 2793793 | - | 75 | 134297881 | Dred_R0081 | - | 05 Gln tRNA |
| 2793813 | 2793889 | - | 77 | 134297881 | Dred_R0082 | - | 09 His tRNA |
| 2807849 | 2807924 | + | 76 | 134297881 | Dred_R0083 | - | 16 Met tRNA |
| 2808591 | 2808667 | + | 77 | 134297881 | Dred_R0084 | - | 11 Arg tRNA |
| 2907452 | 2907525 | - | 74 | 134297881 | Dred_R0085 | - | 01 Gly tRNA |
| 3032244 | 3032318 | - | 75 | 134297881 | Dred_R0086 | - | 11 Arg tRNA |
| 3165251 | 3165326 | - | 76 | 134297881 | Dred_R0087 | - | 12 Thr tRNA |
| 3165433 | 3165508 | - | 76 | 134297881 | Dred_R0088 | - | 12 Thr tRNA |
| 3165513 | 3165588 | - | 76 | 134297881 | Dred_R0089 | - | 13 Val tRNA |
| 3166112 | 3166187 | + | 76 | 134297881 | Dred_R0090 | - | 13 Val tRNA |
| 3166197 | 3166273 | + | 77 | 134297881 | Dred_R0091 | - | 06 Asp tRNA |
| 3190893 | 3191009 | - | 117 | 134297881 | Dred_R0092 | - | 5S ribosomal RNA |
| 3191197 | 3194788 | - | 3592 | 134297881 | Dred_R0093 | - | 23S ribosomal RNA |
| 3195019 | 3196630 | - | 1612 | 134297881 | Dred_R0094 | - | 16S ribosomal RNA |
| 3241871 | 3242217 | - | 347 | 134297881 | Dred_R0095 | - | tmRNA |
| 3580478 | 3580552 | - | 75 | 134297881 | Dred_R0096 | - | 01 Gly tRNA |
| 3580614 | 3580689 | - | 76 | 134297881 | Dred_R0097 | - | 04 Glu tRNA |
| 3580705 | 3580780 | - | 76 | 134297881 | Dred_R0098 | - | 10 Lys tRNA |
| 3580816 | 3580891 | - | 76 | 134297881 | Dred_R0099 | - | 04 Glu tRNA |
| 3580906 | 3580981 | - | 76 | 134297881 | Dred_R0100 | - | 10 Lys tRNA |