ФЭНДОМ


   LOCUS       NC_009437            2970275 bp    DNA     circular BCT 14-AUG-2007
   DEFINITION  Caldicellulosiruptor saccharolyticus DSM 8903, complete genome.
   ACCESSION   NC_009437
   VERSION     NC_009437.1  GI:146295085
   KEYWORDS    .
   SOURCE      Caldicellulosiruptor saccharolyticus DSM 8903
     ORGANISM  Caldicellulosiruptor saccharolyticus DSM 8903
               Bacteria; Firmicutes; Clostridia; Clostridiales;
               Syntrophomonadaceae; Caldicellulosiruptor.
   REFERENCE   1  (bases 1 to 2970275)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Kiss,H., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Lykidis,A., van de Werken,H.J.G.,
               Verhaart,M.R.A., VanFossen,A.L., Lewis,D.L., Nichols,J.D.,
               Goorissen,H.P., van Niel,E.W.J., Stams,F.J.M., Willquist,K.U.,
               Ward,D.E., van der Oost,J., Kelly,R.M., Kengen,S.M.W. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Genome sequence of the thermophilic hydrogen-producing bacterium
               Caldicellulosiruptor saccharolyticus DSM 8903
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 2970275)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (08-MAY-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2970275)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Kiss,H., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Lykidis,A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (16-APR-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000679.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000186
               Source DNA available from Robert M Kelly (rmkelly@eos.ncsu.edu)
               Bacteria available from DSMZ: DSM 8903
               Contacts: Robert M Kelly (rmkelly@eos.ncsu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376)
               Additinal note: There are an unresolved number of A's at location
               913,462.
               COMPLETENESS: full length.


Расположение РНК Править

Начало Конец Направление Длина PID Ген COG Комментарий
284251 285806 + 1556 146295085 Csac_R0001 - 16S ribosomal RNA
285859 285934 + 76 146295085 Csac_R0002 - 02</sub> Ala tRNA
285944 286020 + 77 146295085 Csac_R0003 - 14</sub> Ile tRNA
286093 289056 + 2964 146295085 Csac_R0004 - 23S ribosomal RNA
289124 289239 + 116 146295085 Csac_R0005 - 5S ribosomal RNA
330732 330824 - 93 146295085 Csac_R0006 - 08</sub> Ser tRNA
486454 488011 + 1558 146295085 Csac_R0007 - 16S ribosomal RNA
488147 491112 + 2966 146295085 Csac_R0008 - 23S ribosomal RNA
491189 491304 + 116 146295085 Csac_R0009 - 5S ribosomal RNA
517256 517343 + 88 146295085 Csac_R0010 - 15</sub> Leu tRNA
605388 605464 + 77 146295085 Csac_R0011 - 03</sub> Pro tRNA
605560 605644 + 85 146295085 Csac_R0012 - 18</sub> Tyr tRNA
605662 605737 + 76 146295085 Csac_R0013 - 12</sub> Thr tRNA
605764 605839 + 76 146295085 Csac_R0014 - 10</sub> Lys tRNA
605848 605924 + 77 146295085 Csac_R0015 - 11</sub> Arg tRNA
850051 850137 + 87 146295085 Csac_R0016 - SRP RNA; RNA component of signal recognition particle
861334 861425 + 92 146295085 Csac_R0017 - 08</sub> Ser tRNA
1013590 1013667 - 78 146295085 Csac_R0018 - 03</sub> Pro tRNA
1020428 1020503 + 76 146295085 Csac_R0019 - 13</sub> Val tRNA
1020512 1020588 + 77 146295085 Csac_R0020 - 06</sub> Asp tRNA
1020600 1020675 + 76 146295085 Csac_R0021 - 17</sub> Phe tRNA
1020694 1020769 + 76 146295085 Csac_R0022 - 01</sub> Gly tRNA
1020792 1020866 + 75 146295085 Csac_R0023 - 19</sub> Cys tRNA
1143722 1143797 - 76 146295085 Csac_R0024 - 11</sub> Arg tRNA
1244819 1245183 - 365 146295085 Csac_R0025 - tmRNA
1389177 1389269 - 93 146295085 Csac_R0026 - 08</sub> Ser tRNA
1400474 1400550 + 77 146295085 Csac_R0027 - 09</sub> His tRNA
1400565 1400640 + 76 146295085 Csac_R0028 - 05</sub> Gln tRNA
1405841 1405916 + 76 146295085 Csac_R0029 - 10</sub> Lys tRNA
1617865 1617941 - 77 146295085 Csac_R0030 - 11</sub> Arg tRNA
1813559 1813632 + 74 146295085 Csac_R0031 - 01</sub> Gly tRNA
1891247 1891325 - 79 146295085 Csac_R0032 - 03</sub> Pro tRNA
1912700 1912776 - 77 146295085 Csac_R0033 - 13</sub> Val tRNA
2241920 2241994 + 75 146295085 Csac_R0034 - 12</sub> Thr tRNA
2263873 2264171 - 299 146295085 Csac_R0035 - bacterial RNase P
2318657 2318743 - 87 146295085 Csac_R0036 - 15</sub> Leu tRNA
2323865 2323939 - 75 146295085 Csac_R0037 - 04</sub> Glu tRNA
2323969 2324045 - 77 146295085 Csac_R0038 - 16</sub> Met tRNA
2324066 2324141 - 76 146295085 Csac_R0039 - 16</sub> Met tRNA
2324147 2324236 - 90 146295085 Csac_R0040 - 15</sub> Leu tRNA
2324293 2324377 - 85 146295085 Csac_R0041 - 15</sub> Leu tRNA
2350660 2350736 - 77 146295085 Csac_R0042 - 12</sub> Thr tRNA
2350786 2350859 - 74 146295085 Csac_R0043 - 01</sub> Gly tRNA
2353809 2353899 - 91 146295085 Csac_R0044 - 08</sub> Ser tRNA
2375147 2375262 - 116 146295085 Csac_R0045 - 5S ribosomal RNA
2375335 2378297 - 2963 146295085 Csac_R0046 - 23S ribosomal RNA
2378371 2378447 - 77 146295085 Csac_R0047 - 14</sub> Ile tRNA
2378454 2378529 - 76 146295085 Csac_R0048 - 02</sub> Ala tRNA
2378593 2380149 - 1557 146295085 Csac_R0049 - 16S ribosomal RNA
2390093 2390168 - 76 146295085 Csac_R0050 - 04</sub> Glu tRNA
2390173 2390246 - 74 146295085 Csac_R0051 - 05</sub> Gln tRNA
2742575 2742649 - 75 146295085 Csac_R0052 - 04</sub> Glu tRNA
2742673 2742748 - 76 146295085 Csac_R0053 - 10</sub> Lys tRNA
2876559 2876634 - 76 146295085 Csac_R0054 - 16</sub> Met tRNA
2876644 2876718 - 75 146295085 Csac_R0055 - 07</sub> Asn tRNA
2884397 2884484 + 88 146295085 Csac_R0056 - 15</sub> Leu tRNA
2884554 2884630 + 77 146295085 Csac_R0057 - 11</sub> Arg tRNA
2938708 2938783 + 76 146295085 Csac_R0058 - 20</sub> Trp tRNA