LOCUS NC_009485 8264687 bp DNA circular BCT 14-AUG-2007
DEFINITION Bradyrhizobium sp. BTAi1, complete genome.
ACCESSION NC_009485
VERSION NC_009485.1 GI:148251626
KEYWORDS .
SOURCE Bradyrhizobium sp. BTAi1
ORGANISM Bradyrhizobium sp. BTAi1
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
Bradyrhizobiaceae; Bradyrhizobium.
REFERENCE 1 (bases 1 to 8264687)
AUTHORS Giraud,E., Moulin,L., Vallenet,D., Barbe,V., Cytrin,E.,
Avarre,J.-C., Jaubert,M., Simon,D., Cartieaux,F., Prin,Y., Bena,G.,
Hannibal,L., Fardoux,J., Kojadinovic,M., Vuillet,L., Lajus,A.,
Cruveiller,S., Rouy,Z., Mangenot,S., Segurens,B., Dossat,C.,
Franck,W.L., Chang,W.-S., Saunders,E., Bruce,D., Richardson,P.,
Normand,P., Dreyfus,B., Pignol,D., Stacey,G., Emerich,D.,
Vermeglio,A., Medigue,C. and Sadowsky,M.
CONSRTM US DOE Joint Genome Institute
TITLE Rhizobial Nod Factors are not Universally Required for Legume
Nodulation
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 8264687)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (23-MAY-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 8264687)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Mikhailova,N. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000494.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4000390
Source DNA and bacteria available from Michael Sadowsky
(sadowsky@umn.edu)
Bacteria available from ATCC: ATCC BAA-1182
Contacts: Eric Giraud (giraud@mpl.ird.fr)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК[]
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 112686 | 112761 | + | 76 | 148251626 | BBta_tRNA1 | - | 02 Ala tRNA |
| 230495 | 230581 | + | 87 | 148251626 | BBta_tRNA2 | - | 15 Leu tRNA |
| 276743 | 276818 | + | 76 | 148251626 | BBta_tRNA3 | - | 02 Ala tRNA |
| 289648 | 289723 | - | 76 | 148251626 | BBta_tRNA52 | - | 12 Thr tRNA |
| 310428 | 310502 | + | 75 | 148251626 | BBta_tRNA4 | - | 01 Gly tRNA |
| 432947 | 433036 | + | 90 | 148251626 | BBta_tRNA5 | - | 08 Ser tRNA |
| 587810 | 587899 | + | 90 | 148251626 | BBta_tRNA6 | - | 08 Ser tRNA |
| 758361 | 758463 | + | 103 | 148251626 | BBta_miscRNA9 | - | ykkC-yxkD |
| 799661 | 799734 | + | 74 | 148251626 | BBta_tRNA7 | - | 01 Gly tRNA |
| 927889 | 927963 | - | 75 | 148251626 | BBta_tRNA51 | - | 12 Thr tRNA |
| 935782 | 935857 | + | 76 | 148251626 | BBta_tRNA8 | - | 17 Phe tRNA |
| 1169214 | 1169298 | - | 85 | 148251626 | BBta_tRNA50 | - | 15 Leu tRNA |
| 1273684 | 1275176 | + | 1493 | 148251626 | BBta_rRNA16S1 | - | 16S ribosomal RNA |
| 1275407 | 1275483 | + | 77 | 148251626 | BBta_tRNA9 | - | 14 Ile tRNA |
| 1275627 | 1275702 | + | 76 | 148251626 | BBta_tRNA10 | - | 02 Ala tRNA |
| 1276223 | 1279081 | + | 2859 | 148251626 | BBta_rRNA23S1 | - | 23S ribosomal RNA |
| 1279178 | 1279300 | + | 123 | 148251626 | BBta_rRNA5S1 | - | 5S ribosomal RNA |
| 1294885 | 1294961 | + | 77 | 148251626 | BBta_tRNA11 | - | 16 Met tRNA |
| 1326564 | 1326631 | + | 68 | 148251626 | BBta_tRNA12 | - | Xaa tRNA |
| 1490439 | 1490513 | + | 75 | 148251626 | BBta_tRNA13 | - | 13 Val tRNA |
| 1817692 | 1817887 | + | 196 | 148251626 | BBta_miscRNA13 | - | RFN |
| 1951990 | 1952066 | + | 77 | 148251626 | BBta_tRNA14 | - | 16 Met tRNA |
| 2477299 | 2477375 | + | 77 | 148251626 | BBta_tRNA15 | - | 03 Pro tRNA |
| 2583194 | 2583268 | + | 75 | 148251626 | BBta_tRNA16 | - | 05 Gln tRNA |
| 3290341 | 3290534 | + | 194 | 148251626 | BBta_miscRNA3 | - | Cobalamin |
| 3360485 | 3361977 | + | 1493 | 148251626 | BBta_rRNA16S2 | - | 16S ribosomal RNA |
| 3362208 | 3362284 | + | 77 | 148251626 | BBta_tRNA17 | - | 14 Ile tRNA |
| 3362428 | 3362503 | + | 76 | 148251626 | BBta_tRNA18 | - | 02 Ala tRNA |
| 3363025 | 3365883 | + | 2859 | 148251626 | BBta_rRNA23S2 | - | 23S ribosomal RNA |
| 3365979 | 3366101 | + | 123 | 148251626 | BBta_rRNA5S2 | - | 5S ribosomal RNA |
| 3688227 | 3688300 | - | 74 | 148251626 | BBta_tRNA49 | - | 05 Gln tRNA |
| 3926502 | 3926576 | - | 75 | 148251626 | BBta_tRNA48 | - | 07 Asn tRNA |
| 3926738 | 3926805 | - | 68 | 148251626 | BBta_tRNA47 | - | Xaa tRNA |
| 4096130 | 4096206 | - | 77 | 148251626 | BBta_tRNA46 | - | 11 Arg tRNA |
| 4131171 | 4131244 | - | 74 | 148251626 | BBta_tRNA45 | - | 19 Cys tRNA |
| 4137741 | 4137815 | - | 75 | 148251626 | BBta_tRNA44 | - | 07 Asn tRNA |
| 4231469 | 4231543 | + | 75 | 148251626 | BBta_tRNA19 | - | 04 Glu tRNA |
| 4237965 | 4238041 | + | 77 | 148251626 | BBta_tRNA20 | - | 03 Pro tRNA |
| 4309469 | 4309558 | + | 90 | 148251626 | BBta_tRNA21 | - | 08 Ser tRNA |
| 4388572 | 4388647 | + | 76 | 148251626 | BBta_tRNA22 | - | 10 Lys tRNA |
| 4783759 | 4783835 | - | 77 | 148251626 | BBta_tRNA43 | - | 06 Asp tRNA |
| 4788896 | 4788972 | - | 77 | 148251626 | BBta_tRNA42 | - | 13 Val tRNA |
| 4796151 | 4796235 | - | 85 | 148251626 | BBta_tRNA41 | - | 15 Leu tRNA |
| 4837721 | 4837795 | - | 75 | 148251626 | BBta_miscRNA12 | - | intron gpII |
| 4855404 | 4855481 | - | 78 | 148251626 | BBta_tRNA40 | - | 03 Pro tRNA |
| 4931548 | 4931641 | + | 94 | 148251626 | BBta_tRNA23 | - | 08 Ser tRNA |
| 5130994 | 5131078 | - | 85 | 148251626 | BBta_tRNA39 | - | 15 Leu tRNA |
| 5191948 | 5192024 | + | 77 | 148251626 | BBta_tRNA24 | - | 11 Arg tRNA |
| 5321726 | 5321801 | - | 76 | 148251626 | BBta_tRNA38 | - | 20 Trp tRNA |
| 5356462 | 5356535 | - | 74 | 148251626 | BBta_tRNA37 | - | 01 Gly tRNA |
| 5389264 | 5389349 | - | 86 | 148251626 | BBta_tRNA36 | - | 18 Tyr tRNA |
| 5392519 | 5392593 | + | 75 | 148251626 | BBta_tRNA25 | - | 12 Thr tRNA |
| 5463122 | 5463208 | + | 87 | 148251626 | BBta_tRNA26 | - | 15 Leu tRNA |
| 5669954 | 5670060 | + | 107 | 148251626 | BBta_miscRNA5 | - | gcvT |
| 5670064 | 5670154 | + | 91 | 148251626 | BBta_miscRNA6 | - | gcvT |
| 6260705 | 6260780 | - | 76 | 148251626 | BBta_tRNA35 | - | 10 Lys tRNA |
| 6303139 | 6303357 | + | 219 | 148251626 | BBta_miscRNA4 | - | Cobalamin |
| 6305642 | 6305856 | + | 215 | 148251626 | BBta_miscRNA2 | - | Cobalamin |
| 6425386 | 6425750 | + | 365 | 148251626 | BBta_miscRNA10 | - | RNaseP |
| 6469822 | 6469918 | + | 97 | 148251626 | BBta_miscRNA14 | - | THI |
| 6615111 | 6615186 | + | 76 | 148251626 | BBta_tRNA27 | - | 16 Met tRNA |
| 6816299 | 6816372 | - | 74 | 148251626 | BBta_miscRNA11 | - | intron gpII |
| 6851026 | 6851100 | + | 75 | 148251626 | BBta_tRNA28 | - | 13 Val tRNA |
| 7041924 | 7041998 | - | 75 | 148251626 | BBta_tRNA34 | - | 04 Glu tRNA |
| 7078602 | 7078678 | + | 77 | 148251626 | BBta_tRNA29 | - | Xaa tRNA |
| 7140318 | 7140394 | - | 77 | 148251626 | BBta_tRNA33 | - | 09 His tRNA |
| 7688219 | 7688295 | - | 77 | 148251626 | BBta_tRNA32 | - | 11 Arg tRNA |
| 7712066 | 7712163 | - | 98 | 148251626 | BBta_miscRNA1 | - | SRP |
| 7904972 | 7905048 | - | 77 | 148251626 | BBta_tRNA31 | - | 11 Arg tRNA |
| 8089157 | 8089233 | + | 77 | 148251626 | BBta_tRNA30 | - | 11 Arg tRNA |