ФЭНДОМ


   LOCUS       NC_009486            1823511 bp    DNA     circular BCT 26-JUN-2007
   DEFINITION  Thermotoga petrophila RKU-1, complete genome.
   ACCESSION   NC_009486
   VERSION     NC_009486.1  GI:148269145
   KEYWORDS    .
   SOURCE      Thermotoga petrophila RKU-1
     ORGANISM  Thermotoga petrophila RKU-1
               Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga.
   REFERENCE   1  (bases 1 to 1823511)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D.,
               Detter,J.C., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M.,
               Hauser,L., Kyrpides,N., Mikhailova,N., Noll,K. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Thermotoga petrophila RKU-1
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 1823511)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (23-MAY-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 1823511)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D.,
               Detter,J.C., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M.,
               Hauser,L., Kyrpides,N., Mikhailova,N., Noll,K. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (14-MAY-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000702.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4002277
               Source DNA and bacteria available from Kenneth Noll
               (kenneth.noll@uconn.edu)
               Contacts: Kenneth Noll (kenneth.noll@uconn.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК Править

Начало Конец Направление Длина PID Ген COG Комментарий
68664 68750 - 87 148269145 Tpet_R0001 - 15</sub> Leu tRNA
99548 99636 - 89 148269145 Tpet_R0002 - 08</sub> Ser tRNA
102919 103005 - 87 148269145 Tpet_R0003 - 15</sub> Leu tRNA
173828 173901 - 74 148269145 Tpet_R0004 - 05</sub> Gln tRNA
195043 195322 - 280 148269145 Tpet_R0005 - RNase P class A
321978 322053 - 76 148269145 Tpet_R0006 - 12</sub> Thr tRNA
403455 403808 - 354 148269145 Tpet_R0007 - tmRNA
424450 424525 + 76 148269145 Tpet_R0008 - 10</sub> Lys tRNA
424531 424617 + 87 148269145 Tpet_R0009 - 15</sub> Leu tRNA
424629 424703 + 75 148269145 Tpet_R0010 - 01</sub> Gly tRNA
432763 432851 + 89 148269145 Tpet_R0011 - 08</sub> Ser tRNA
460884 460959 - 76 148269145 Tpet_R0012 - 20</sub> Trp tRNA
461139 461225 - 87 148269145 Tpet_R0013 - 18</sub> Tyr tRNA
461235 461310 - 76 148269145 Tpet_R0014 - 12</sub> Thr tRNA
461334 461406 - 73 148269145 Tpet_R0015 - 16</sub> Met tRNA
461513 461588 - 76 148269145 Tpet_R0016 - 16</sub> Met tRNA
515521 515594 + 74 148269145 Tpet_R0017 - 05</sub> Gln tRNA
589246 589322 - 77 148269145 Tpet_R0018 - 12</sub> Thr tRNA
735317 735393 - 77 148269145 Tpet_R0019 - 11</sub> Arg tRNA
735407 735496 - 90 148269145 Tpet_R0020 - 08</sub> Ser tRNA
737048 737123 + 76 148269145 Tpet_R0021 - 01</sub> Gly tRNA
737135 737211 + 77 148269145 Tpet_R0022 - 11</sub> Arg tRNA
737222 737297 + 76 148269145 Tpet_R0023 - 09</sub> His tRNA
737303 737379 + 77 148269145 Tpet_R0024 - 11</sub> Arg tRNA
741146 741221 - 76 148269145 Tpet_R0025 - 02</sub> Ala tRNA
749558 749685 - 128 148269145 Tpet_R0026 - 5S ribosomal RNA
749724 750701 - 978 148269145 Tpet_R0027 - 23S ribosomal RNA
751403 753441 - 2039 148269145 Tpet_R0027 - 23S ribosomal RNA
753482 753557 - 76 148269145 Tpet_R0028 - 02</sub> Ala tRNA
753563 753639 - 77 148269145 Tpet_R0029 - 14</sub> Ile tRNA
753680 755242 - 1563 148269145 Tpet_R0030 - 16S ribosomal RNA
793592 793668 - 77 148269145 Tpet_R0031 - 03</sub> Pro tRNA
1075434 1075511 + 78 148269145 Tpet_R0032 - 06</sub> Asp tRNA
1094542 1094632 - 91 148269145 Tpet_R0033 - 08</sub> Ser tRNA
1103791 1103866 + 76 148269145 Tpet_R0034 - 04</sub> Glu tRNA
1147459 1147535 - 77 148269145 Tpet_R0035 - 03</sub> Pro tRNA
1147701 1147775 + 75 148269145 Tpet_R0036 - 04</sub> Glu tRNA
1223912 1223987 - 76 148269145 Tpet_R0037 - 10</sub> Lys tRNA
1224009 1224083 - 75 148269145 Tpet_R0038 - 11</sub> Arg tRNA
1224090 1224165 - 76 148269145 Tpet_R0039 - 02</sub> Ala tRNA
1224355 1224430 - 76 148269145 Tpet_R0040 - 17</sub> Phe tRNA
1224443 1224517 - 75 148269145 Tpet_R0041 - 13</sub> Val tRNA
1264554 1264629 + 76 148269145 Tpet_R0042 - 11</sub> Arg tRNA
1369546 1369620 + 75 148269145 Tpet_R0043 - 13</sub> Val tRNA
1388139 1388224 - 86 148269145 Tpet_R0044 - 15</sub> Leu tRNA
1388363 1388437 + 75 148269145 Tpet_R0045 - 13</sub> Val tRNA
1399812 1399888 - 77 148269145 Tpet_R0046 - 19</sub> Cys tRNA
1406546 1406635 + 90 148269145 Tpet_R0047 - 15</sub> Leu tRNA
1429800 1429875 - 76 148269145 Tpet_R0048 - 01</sub> Gly tRNA
1429981 1430057 + 77 148269145 Tpet_R0049 - 16</sub> Met tRNA
1517019 1517095 - 77 148269145 Tpet_R0050 - 03</sub> Pro tRNA
1563423 1563498 - 76 148269145 Tpet_R0051 - 07</sub> Asn tRNA
1631652 1631758 + 107 148269145 Tpet_R0052 - SRP RNA; RNA component of signal recognition particle