ФЭНДОМ


   LOCUS       NC_009512            5959964 bp    DNA     circular BCT 02-JUL-2007
   DEFINITION  Pseudomonas putida F1, complete genome.
   ACCESSION   NC_009512
   VERSION     NC_009512.1  GI:148545259
   KEYWORDS    .
   SOURCE      Pseudomonas putida F1
     ORGANISM  Pseudomonas putida F1
               Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
               Pseudomonadaceae; Pseudomonas.
   REFERENCE   1  (bases 1 to 5959964)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Parales,R. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Pseudomonas putida F1
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5959964)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (04-JUN-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5959964)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Parales,R. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (25-MAY-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000712.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000373
               Source DNA and bacteria available from Rebecca Parales
               (reparales@ucdavis.edu)
               Contacts: Rebecca Parales (reparales@ucdavis.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК Править

Начало Конец Направление Длина PID Ген COG Комментарий
185124 186672 + 1549 148545259 Pput_R0001 - 16S ribosomal RNA
186953 189855 + 2903 148545259 Pput_R0002 - 23S ribosomal RNA
189979 190094 + 116 148545259 Pput_R0003 - 5S ribosomal RNA
190204 190319 + 116 148545259 Pput_R0004 - 5S ribosomal RNA
265864 265940 - 77 148545259 Pput_R0005 - 11</sub> Arg tRNA
338834 338909 - 76 148545259 Pput_R0006 - 12</sub> Thr tRNA
348720 348795 - 76 148545259 Pput_R0007 - 17</sub> Phe tRNA
482039 482115 - 77 148545259 Pput_R0008 - 16</sub> Met tRNA
539837 541385 + 1549 148545259 Pput_R0009 - 16S ribosomal RNA
541451 541527 + 77 148545259 Pput_R0010 - 14</sub> Ile tRNA
541534 541609 + 76 148545259 Pput_R0011 - 02</sub> Ala tRNA
541844 544746 + 2903 148545259 Pput_R0012 - 23S ribosomal RNA
544881 544996 + 116 148545259 Pput_R0013 - 5S ribosomal RNA
547462 547545 + 84 148545259 Pput_R0014 - 18</sub> Tyr tRNA
547570 547643 + 74 148545259 Pput_R0015 - 01</sub> Gly tRNA
547673 547748 + 76 148545259 Pput_R0016 - 12</sub> Thr tRNA
549075 549150 + 76 148545259 Pput_R0017 - 20</sub> Trp tRNA
717166 718714 + 1549 148545259 Pput_R0018 - 16S ribosomal RNA
718995 721897 + 2903 148545259 Pput_R0019 - 23S ribosomal RNA
722033 722148 + 116 148545259 Pput_R0020 - 5S ribosomal RNA
752653 752728 + 76 148545259 Pput_R0021 - 07</sub> Asn tRNA
752733 752809 + 77 148545259 Pput_R0022 - 03</sub> Pro tRNA
752815 752890 + 76 148545259 Pput_R0023 - 10</sub> Lys tRNA
752937 753013 + 77 148545259 Pput_R0024 - 03</sub> Pro tRNA
753019 753094 + 76 148545259 Pput_R0025 - 10</sub> Lys tRNA
760664 760739 + 76 148545259 Pput_R0026 - 12</sub> Thr tRNA
768920 768991 - 72 148545259 Pput_R0027 - Xaa tRNA
820486 820562 - 77 148545259 Pput_R0028 - 16</sub> Met tRNA
848700 848774 - 75 148545259 Pput_R0029 - 05</sub> Gln tRNA
983562 983646 - 85 148545259 Pput_R0030 - 15</sub> Leu tRNA
1342813 1344361 + 1549 148545259 Pput_R0031 - 16S ribosomal RNA
1344427 1344503 + 77 148545259 Pput_R0032 - 14</sub> Ile tRNA
1344510 1344585 + 76 148545259 Pput_R0033 - 02</sub> Ala tRNA
1344820 1347722 + 2903 148545259 Pput_R0034 - 23S ribosomal RNA
1347857 1347972 + 116 148545259 Pput_R0035 - 5S ribosomal RNA
1398184 1398260 - 77 148545259 Pput_R0036 - 16</sub> Met tRNA
1398395 1398471 - 77 148545259 Pput_R0037 - 16</sub> Met tRNA
1398606 1398682 - 77 148545259 Pput_R0038 - 16</sub> Met tRNA
1420230 1420305 + 76 148545259 Pput_R0039 - 10</sub> Lys tRNA
1437688 1437777 + 90 148545259 Pput_R0040 - 08</sub> Ser tRNA
1620544 1620634 + 91 148545259 Pput_R0041 - 08</sub> Ser tRNA
1620741 1620817 + 77 148545259 Pput_R0042 - 11</sub> Arg tRNA
1620890 1620966 + 77 148545259 Pput_R0043 - 11</sub> Arg tRNA
1621041 1621117 + 77 148545259 Pput_R0044 - 11</sub> Arg tRNA
1621191 1621267 + 77 148545259 Pput_R0045 - 11</sub> Arg tRNA
1624589 1624665 + 77 148545259 Pput_R0046 - 11</sub> Arg tRNA
1786688 1786804 + 117 148545259 Pput_R0047 - SRP RNA; RNA component of signal recognition particle
2022122 2022197 + 76 148545259 Pput_R0048 - 01</sub> Gly tRNA
2113660 2113747 + 88 148545259 Pput_R0049 - 08</sub> Ser tRNA
2188877 2188950 + 74 148545259 Pput_R0050 - 19</sub> Cys tRNA
2206571 2206655 - 85 148545259 Pput_R0051 - 15</sub> Leu tRNA
3630810 3630886 - 77 148545259 Pput_R0052 - 03</sub> Pro tRNA
3654686 3654762 - 77 148545259 Pput_R0053 - 13</sub> Val tRNA
3654935 3655011 - 77 148545259 Pput_R0054 - 13</sub> Val tRNA
3766514 3766588 - 75 148545259 Pput_R0055 - 05</sub> Gln tRNA
3877213 3877288 - 76 148545259 Pput_R0056 - 09</sub> His tRNA
3877325 3877409 - 85 148545259 Pput_R0057 - 15</sub> Leu tRNA
3877462 3877537 - 76 148545259 Pput_R0058 - 09</sub> His tRNA
3877579 3877655 - 77 148545259 Pput_R0059 - 11</sub> Arg tRNA
3909594 3909720 - 127 148545259 Pput_R0060 - 5S ribosomal RNA
3909834 3912738 - 2905 148545259 Pput_R0061 - 23S ribosomal RNA
3912980 3913055 - 76 148545259 Pput_R0062 - 02</sub> Ala tRNA
3913080 3913156 - 77 148545259 Pput_R0063 - 14</sub> Ile tRNA
3913241 3914778 - 1538 148545259 Pput_R0064 - 16S ribosomal RNA
4043269 4043345 + 77 148545259 Pput_R0065 - 03</sub> Pro tRNA
4213351 4213427 - 77 148545259 Pput_R0066 - 06</sub> Asp tRNA
4213569 4213645 - 77 148545259 Pput_R0067 - 06</sub> Asp tRNA
4213745 4213821 - 77 148545259 Pput_R0068 - 06</sub> Asp tRNA
4213887 4213962 - 76 148545259 Pput_R0069 - 13</sub> Val tRNA
4242338 4242413 - 76 148545259 Pput_R0070 - 04</sub> Glu tRNA
4242456 4242531 - 76 148545259 Pput_R0071 - 02</sub> Ala tRNA
4242593 4242668 - 76 148545259 Pput_R0072 - 04</sub> Glu tRNA
4242711 4242786 - 76 148545259 Pput_R0073 - 02</sub> Ala tRNA
4242838 4242913 - 76 148545259 Pput_R0074 - 04</sub> Glu tRNA
4242986 4243061 - 76 148545259 Pput_R0075 - 02</sub> Ala tRNA
4251314 4251389 + 76 148545259 Pput_R0076 - 07</sub> Asn tRNA
4316361 4316436 - 76 148545259 Pput_R0077 - 01</sub> Gly tRNA
4316522 4316597 - 76 148545259 Pput_R0078 - 01</sub> Gly tRNA
4316601 4316676 - 76 148545259 Pput_R0079 - 04</sub> Glu tRNA
4316769 4316844 - 76 148545259 Pput_R0080 - 01</sub> Gly tRNA
4316847 4316922 - 76 148545259 Pput_R0081 - 04</sub> Glu tRNA
4347692 4347781 - 90 148545259 Pput_R0082 - 08</sub> Ser tRNA
4531511 4531587 - 77 148545259 Pput_R0083 - 06</sub> Asp tRNA
4531601 4531676 - 76 148545259 Pput_R0084 - 13</sub> Val tRNA
4531847 4531923 - 77 148545259 Pput_R0085 - 06</sub> Asp tRNA
4531937 4532012 - 76 148545259 Pput_R0086 - 13</sub> Val tRNA
4825075 4825148 + 74 148545259 Pput_R0087 - 01</sub> Gly tRNA
4918882 4919176 - 295 148545259 Pput_R0088 - RNA component of RNaseP
5071220 5071346 - 127 148545259 Pput_R0089 - 5S ribosomal RNA
5071460 5074364 - 2905 148545259 Pput_R0090 - 23S ribosomal RNA
5074606 5074681 - 76 148545259 Pput_R0091 - 02</sub> Ala tRNA
5074706 5074782 - 77 148545259 Pput_R0092 - 14</sub> Ile tRNA
5074867 5076404 - 1538 148545259 Pput_R0093 - 16S ribosomal RNA
5124893 5124969 - 77 148545259 Pput_R0094 - 16</sub> Met tRNA
5125070 5125155 - 86 148545259 Pput_R0095 - 15</sub> Leu tRNA
5154291 5154679 + 389 148545259 Pput_R0096 - tmRNA
5331494 5331580 + 87 148545259 Pput_R0097 - 15</sub> Leu tRNA
5331669 5331755 + 87 148545259 Pput_R0098 - 15</sub> Leu tRNA