ФЭНДОМ


   LOCUS       NC_009513            1999618 bp    DNA     circular BCT 14-AUG-2007
   DEFINITION  Lactobacillus reuteri F275, complete genome.
   ACCESSION   NC_009513
   VERSION     NC_009513.1  GI:148543243
   KEYWORDS    .
   SOURCE      Lactobacillus reuteri F275
     ORGANISM  Lactobacillus reuteri F275
               Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae;
               Lactobacillus.
   REFERENCE   1  (bases 1 to 1999618)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Goltsman,E., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Kim,E., Walter,J., Heng,N.C.K., Tannock,G.W. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Lactobacillus reuteri DSM 20016
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 1999618)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (04-JUN-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 1999618)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Goltsman,E., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Kim,E., Walter,J., Heng,N.C.K., Tannock,G.W. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (17-MAY-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000705.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000135
               Source DNA available from Gerald Tannock
               (gerald.tannock@stonebow.otago.ac.nz)
               Bacteria available from DSMZ: DSM 20016
               Contacts: Gerald Tannock (gerald.tannock@stonebow.otago.ac.nz)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-PGF
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК Править

Начало Конец Направление Длина PID Ген COG Комментарий
18213 18288 - 76 148543243 Lreu_R0001 - 10</sub> Lys tRNA
20774 20849 - 76 148543243 Lreu_R0002 - 10</sub> Lys tRNA
177719 179305 + 1587 148543243 Lreu_R0003 - 16S ribosomal RNA
179499 182423 + 2925 148543243 Lreu_R0004 - 23S ribosomal RNA
182502 182620 + 119 148543243 Lreu_R0005 - 5S ribosomal RNA
182702 182774 + 73 148543243 Lreu_R0006 - 12</sub> Thr tRNA
204045 204119 + 75 148543243 Lreu_R0007 - 09</sub> His tRNA
233600 233673 + 74 148543243 Lreu_R0008 - 12</sub> Thr tRNA
312384 313970 + 1587 148543243 Lreu_R0009 - 16S ribosomal RNA
314164 317088 + 2925 148543243 Lreu_R0010 - 23S ribosomal RNA
317167 317286 + 120 148543243 Lreu_R0011 - 5S ribosomal RNA
317289 317361 + 73 148543243 Lreu_R0012 - 07</sub> Asn tRNA
317408 317480 + 73 148543243 Lreu_R0013 - 12</sub> Thr tRNA
320661 320733 + 73 148543243 Lreu_R0014 - 07</sub> Asn tRNA
324334 324416 + 83 148543243 Lreu_R0015 - 18</sub> Tyr tRNA
324427 324498 + 72 148543243 Lreu_R0016 - 05</sub> Gln tRNA
335218 335306 + 89 148543243 Lreu_R0017 - 15</sub> Leu tRNA
372805 372894 + 90 148543243 Lreu_R0018 - SRP RNA; RNA component of signal recognition particle
469226 469596 + 371 148543243 Lreu_R0019 - tmRNA
485359 485431 + 73 148543243 Lreu_R0020 - 05</sub> Gln tRNA
487534 487606 + 73 148543243 Lreu_R0021 - 04</sub> Glu tRNA
624373 625959 + 1587 148543243 Lreu_R0022 - 16S ribosomal RNA
626044 626118 + 75 148543243 Lreu_R0023 - 14</sub> Ile tRNA
626122 626194 + 73 148543243 Lreu_R0024 - 02</sub> Ala tRNA
626353 629277 + 2925 148543243 Lreu_R0025 - 23S ribosomal RNA
629355 629474 + 120 148543243 Lreu_R0026 - 5S ribosomal RNA
629476 629548 + 73 148543243 Lreu_R0027 - 13</sub> Val tRNA
629567 629639 + 73 148543243 Lreu_R0028 - 10</sub> Lys tRNA
629683 629755 + 73 148543243 Lreu_R0029 - 12</sub> Thr tRNA
629765 629836 + 72 148543243 Lreu_R0030 - 01</sub> Gly tRNA
629853 629938 + 86 148543243 Lreu_R0031 - 15</sub> Leu tRNA
629947 630020 + 74 148543243 Lreu_R0032 - 11</sub> Arg tRNA
630026 630099 + 74 148543243 Lreu_R0033 - 03</sub> Pro tRNA
630130 630203 + 74 148543243 Lreu_R0034 - 16</sub> Met tRNA
630219 630295 + 77 148543243 Lreu_R0035 - 16</sub> Met tRNA
630345 630432 + 88 148543243 Lreu_R0036 - 08</sub> Ser tRNA
630441 630514 + 74 148543243 Lreu_R0037 - 16</sub> Met tRNA
630519 630593 + 75 148543243 Lreu_R0038 - 06</sub> Asp tRNA
630603 630675 + 73 148543243 Lreu_R0039 - 17</sub> Phe tRNA
630691 630761 + 71 148543243 Lreu_R0040 - 01</sub> Gly tRNA
630771 630845 + 75 148543243 Lreu_R0041 - 14</sub> Ile tRNA
630848 630935 + 88 148543243 Lreu_R0042 - 08</sub> Ser tRNA
630940 631011 + 72 148543243 Lreu_R0043 - 04</sub> Glu tRNA
631022 631095 + 74 148543243 Lreu_R0044 - 16</sub> Met tRNA
631100 631174 + 75 148543243 Lreu_R0045 - 06</sub> Asp tRNA
639554 641140 + 1587 148543243 Lreu_R0046 - 16S ribosomal RNA
641225 641299 + 75 148543243 Lreu_R0047 - 14</sub> Ile tRNA
641303 641375 + 73 148543243 Lreu_R0048 - 02</sub> Ala tRNA
641534 644458 + 2925 148543243 Lreu_R0049 - 23S ribosomal RNA
644537 644656 + 120 148543243 Lreu_R0050 - 5S ribosomal RNA
741822 741909 - 88 148543243 Lreu_R0051 - 08</sub> Ser tRNA
1030554 1030625 + 72 148543243 Lreu_R0052 - 11</sub> Arg tRNA
1035974 1036045 - 72 148543243 Lreu_R0053 - 05</sub> Gln tRNA
1036085 1036157 - 73 148543243 Lreu_R0054 - 13</sub> Val tRNA
1036163 1036234 - 72 148543243 Lreu_R0055 - 04</sub> Glu tRNA
1036252 1036322 - 71 148543243 Lreu_R0056 - 01</sub> Gly tRNA
1036507 1036580 - 74 148543243 Lreu_R0057 - 03</sub> Pro tRNA
1036584 1036672 - 89 148543243 Lreu_R0058 - 15</sub> Leu tRNA
1036689 1036760 - 72 148543243 Lreu_R0059 - 01</sub> Gly tRNA
1036766 1036837 - 72 148543243 Lreu_R0060 - 04</sub> Glu tRNA
1047022 1047095 + 74 148543243 Lreu_R0061 - 03</sub> Pro tRNA
1074436 1074556 - 121 148543243 Lreu_R0062 - 5S ribosomal RNA
1074635 1077558 - 2924 148543243 Lreu_R0063 - 23S ribosomal RNA
1077752 1079338 - 1587 148543243 Lreu_R0064 - 16S ribosomal RNA
1244027 1244100 + 74 148543243 Lreu_R0065 - 11</sub> Arg tRNA
1323697 1323767 - 71 148543243 Lreu_R0066 - 01</sub> Gly tRNA
1329501 1329587 - 87 148543243 Lreu_R0067 - 15</sub> Leu tRNA
1369035 1369119 - 85 148543243 Lreu_R0068 - 15</sub> Leu tRNA
1369134 1369204 - 71 148543243 Lreu_R0069 - 19</sub> Cys tRNA
1369241 1369315 - 75 148543243 Lreu_R0070 - 09</sub> His tRNA
1369333 1369403 - 71 148543243 Lreu_R0071 - 20</sub> Trp tRNA
1369410 1369492 - 83 148543243 Lreu_R0072 - 18</sub> Tyr tRNA
1369498 1369570 - 73 148543243 Lreu_R0073 - 17</sub> Phe tRNA
1369607 1369679 - 73 148543243 Lreu_R0074 - 13</sub> Val tRNA
1369685 1369756 - 72 148543243 Lreu_R0075 - 04</sub> Glu tRNA
1369764 1369855 - 92 148543243 Lreu_R0076 - 08</sub> Ser tRNA
1369902 1370022 - 121 148543243 Lreu_R0077 - 5S ribosomal RNA
1370101 1373025 - 2925 148543243 Lreu_R0078 - 23S ribosomal RNA
1373183 1373255 - 73 148543243 Lreu_R0079 - 02</sub> Ala tRNA
1373259 1373333 - 75 148543243 Lreu_R0080 - 14</sub> Ile tRNA
1373419 1375005 - 1587 148543243 Lreu_R0081 - 16S ribosomal RNA
1448882 1448954 - 73 148543243 Lreu_R0082 - 11</sub> Arg tRNA
1551234 1551307 - 74 148543243 Lreu_R0083 - 03</sub> Pro tRNA
1551350 1551426 - 77 148543243 Lreu_R0084 - 11</sub> Arg tRNA
1551432 1551503 - 72 148543243 Lreu_R0085 - 01</sub> Gly tRNA
1551594 1551676 - 83 148543243 Lreu_R0086 - 15</sub> Leu tRNA
1551684 1551756 - 73 148543243 Lreu_R0087 - 13</sub> Val tRNA
1573126 1573200 - 75 148543243 Lreu_R0088 - 06</sub> Asp tRNA