ФЭНДОМ


   LOCUS       NC_009523            5801598 bp    DNA     circular BCT 27-JUN-2007
   DEFINITION  Roseiflexus sp. RS-1, complete genome.
   ACCESSION   NC_009523
   VERSION     NC_009523.1  GI:148654188
   KEYWORDS    .
   SOURCE      Roseiflexus sp. RS-1
     ORGANISM  Roseiflexus sp. RS-1
               Bacteria; Chloroflexi; Chloroflexales; Chloroflexaceae;
               Roseiflexus.
   REFERENCE   1  (bases 1 to 5801598)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Bryant,D. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Roseiflexus sp. RS-1
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5801598)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (06-JUN-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5801598)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Bryant,D. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (20-APR-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000686.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000376
               Source DNA and bacteria available from Donald Bryant
               (dab14@psu.edu)
               Contacts: Donald Bryant (dab14@psu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК Править

Начало Конец Направление Длина PID Ген COG Комментарий
183158 183232 + 75 148654188 RoseRS_R0001 - 01</sub> Gly tRNA
208798 208891 - 94 148654188 RoseRS_R0002 - SRP RNA; RNA component of signal recognition particle
209010 209086 + 77 148654188 RoseRS_R0003 - 13</sub> Val tRNA
503630 504025 + 396 148654188 RoseRS_R0004 - RNA component of RNaseP
622834 622908 - 75 148654188 RoseRS_R0005 - 12</sub> Thr tRNA
678592 678667 - 76 148654188 RoseRS_R0006 - 01</sub> Gly tRNA
866969 867042 + 74 148654188 RoseRS_R0007 - 01</sub> Gly tRNA
958788 958864 - 77 148654188 RoseRS_R0008 - 03</sub> Pro tRNA
967499 967587 + 89 148654188 RoseRS_R0009 - 15</sub> Leu tRNA
967589 967664 + 76 148654188 RoseRS_R0010 - 13</sub> Val tRNA
967706 967781 + 76 148654188 RoseRS_R0011 - 17</sub> Phe tRNA
1026564 1026639 - 76 148654188 RoseRS_R0012 - 16</sub> Met tRNA
1048580 1048655 - 76 148654188 RoseRS_R0013 - 06</sub> Asp tRNA
1048664 1048740 - 77 148654188 RoseRS_R0014 - 04</sub> Glu tRNA
1343196 1343270 - 75 148654188 RoseRS_R0015 - 10</sub> Lys tRNA
1414348 1415838 + 1491 148654188 RoseRS_R0016 - 16S ribosomal RNA
1415974 1418934 + 2961 148654188 RoseRS_R0017 - 23S ribosomal RNA
1419001 1419120 + 120 148654188 RoseRS_R0018 - 5S ribosomal RNA
1419123 1419197 + 75 148654188 RoseRS_R0019 - 16</sub> Met tRNA
1462567 1462643 + 77 148654188 RoseRS_R0020 - 04</sub> Glu tRNA
1731942 1732017 - 76 148654188 RoseRS_R0021 - 02</sub> Ala tRNA
1732062 1732138 - 77 148654188 RoseRS_R0022 - 14</sub> Ile tRNA
1785593 1785669 - 77 148654188 RoseRS_R0023 - 13</sub> Val tRNA
2020547 2020620 - 74 148654188 RoseRS_R0024 - 05</sub> Gln tRNA
2020657 2020743 - 87 148654188 RoseRS_R0025 - 15</sub> Leu tRNA
2190218 2190303 + 86 148654188 RoseRS_R0026 - 15</sub> Leu tRNA
2190325 2190401 + 77 148654188 RoseRS_R0027 - 03</sub> Pro tRNA
2276449 2276523 - 75 148654188 RoseRS_R0028 - 16</sub> Met tRNA
2340230 2340305 - 76 148654188 RoseRS_R0029 - 10</sub> Lys tRNA
2407769 2407844 - 76 148654188 RoseRS_R0030 - 11</sub> Arg tRNA
2675595 2675669 - 75 148654188 RoseRS_R0031 - 07</sub> Asn tRNA
2803528 2805018 + 1491 148654188 RoseRS_R0032 - 16S ribosomal RNA
2805154 2808114 + 2961 148654188 RoseRS_R0033 - 23S ribosomal RNA
2808181 2808300 + 120 148654188 RoseRS_R0034 - 5S ribosomal RNA
2808303 2808377 + 75 148654188 RoseRS_R0035 - 16</sub> Met tRNA
2904615 2904690 - 76 148654188 RoseRS_R0036 - 02</sub> Ala tRNA
2904697 2904772 - 76 148654188 RoseRS_R0037 - 02</sub> Ala tRNA
3911765 3911841 + 77 148654188 RoseRS_R0038 - 03</sub> Pro tRNA
3923676 3923761 + 86 148654188 RoseRS_R0039 - 15</sub> Leu tRNA
3993122 3993198 - 77 148654188 RoseRS_R0040 - 11</sub> Arg tRNA
4052554 4052644 - 91 148654188 RoseRS_R0041 - 08</sub> Ser tRNA
4055767 4055842 + 76 148654188 RoseRS_R0042 - 20</sub> Trp tRNA
4055881 4055972 + 92 148654188 RoseRS_R0043 - 08</sub> Ser tRNA
4055986 4056076 + 91 148654188 RoseRS_R0044 - 08</sub> Ser tRNA
4173039 4173125 + 87 148654188 RoseRS_R0045 - 18</sub> Tyr tRNA
4173201 4173276 + 76 148654188 RoseRS_R0046 - 12</sub> Thr tRNA
4428276 4428351 + 76 148654188 RoseRS_R0047 - 12</sub> Thr tRNA
4593759 4594123 + 365 148654188 RoseRS_R0048 - tmRNA
4655290 4655366 + 77 148654188 RoseRS_R0049 - 11</sub> Arg tRNA
4655425 4655514 + 90 148654188 RoseRS_R0050 - 08</sub> Ser tRNA
4676472 4676547 + 76 148654188 RoseRS_R0051 - 11</sub> Arg tRNA
4871342 4871416 + 75 148654188 RoseRS_R0052 - 19</sub> Cys tRNA
4929693 4929767 + 75 148654188 RoseRS_R0053 - 09</sub> His tRNA
5168295 5168379 + 85 148654188 RoseRS_R0054 - 15</sub> Leu tRNA
5254500 5254575 + 76 148654188 RoseRS_R0055 - 11</sub> Arg tRNA
5507986 5508059 + 74 148654188 RoseRS_R0056 - 05</sub> Gln tRNA
5722495 5722571 + 77 148654188 RoseRS_R0057 - 04</sub> Glu tRNA