ФЭНДОМ


   LOCUS       NC_009524            2978976 bp    DNA     circular BCT 14-AUG-2007
   DEFINITION  Psychrobacter sp. PRwf-1, complete genome.
   ACCESSION   NC_009524
   VERSION     NC_009524.1  GI:148651817
   KEYWORDS    .
   SOURCE      Psychrobacter sp. PRwf-1
     ORGANISM  Psychrobacter sp. PRwf-1
               Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
               Moraxellaceae; Psychrobacter.
   REFERENCE   1  (bases 1 to 2978976)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E., Tiedje,J. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Psychrobacter sp. PEwf-1
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 2978976)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E., Tiedjej,J. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (24-MAY-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   REFERENCE   3  (bases 1 to 2978976)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (03-DEC-2003) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000713.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4001101
               Source DNA and bacteria available from James Tiedje
               (tiedjej@pilot.msu.edu)
               Contacts: James Tiedje (tiedjej@pilot.msu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК Править

Начало Конец Направление Длина PID Ген COG Комментарий
72770 72845 - 76 148651817 PsycPRwf_R0001 - 17</sub> Phe tRNA
154137 154212 - 76 148651817 PsycPRwf_R0002 - 04</sub> Glu tRNA
154345 154420 - 76 148651817 PsycPRwf_R0003 - 02</sub> Ala tRNA
183117 183201 + 85 148651817 PsycPRwf_R0004 - 15</sub> Leu tRNA
183580 183656 + 77 148651817 PsycPRwf_R0005 - 16</sub> Met tRNA
250123 250198 + 76 148651817 PsycPRwf_R0006 - 01</sub> Gly tRNA
250335 250410 + 76 148651817 PsycPRwf_R0007 - 01</sub> Gly tRNA
409432 409521 + 90 148651817 PsycPRwf_R0008 - 08</sub> Ser tRNA
409661 409737 + 77 148651817 PsycPRwf_R0009 - 11</sub> Arg tRNA
444879 445195 + 317 148651817 PsycPRwf_R0010 - RNA component of RNaseP
445350 445426 + 77 148651817 PsycPRwf_R0011 - 16</sub> Met tRNA
512302 512378 - 77 148651817 PsycPRwf_R0012 - 03</sub> Pro tRNA
727348 727424 - 77 148651817 PsycPRwf_R0013 - 11</sub> Arg tRNA
776635 778181 + 1547 148651817 PsycPRwf_R0014 - 16S ribosomal RNA
778231 778307 + 77 148651817 PsycPRwf_R0015 - 14</sub> Ile tRNA
778318 778393 + 76 148651817 PsycPRwf_R0016 - 02</sub> Ala tRNA
778714 781576 + 2863 148651817 PsycPRwf_R0017 - 23S ribosomal RNA
781742 781859 + 118 148651817 PsycPRwf_R0018 - 5S ribosomal RNA
828410 828486 + 77 148651817 PsycPRwf_R0019 - 13</sub> Val tRNA
910864 910939 + 76 148651817 PsycPRwf_R0020 - 13</sub> Val tRNA
910978 911054 + 77 148651817 PsycPRwf_R0021 - 06</sub> Asp tRNA
1190821 1190897 - 77 148651817 PsycPRwf_R0022 - 06</sub> Asp tRNA
1190938 1191013 - 76 148651817 PsycPRwf_R0023 - 13</sub> Val tRNA
1494916 1494991 + 76 148651817 PsycPRwf_R0024 - 11</sub> Arg tRNA
1566834 1566910 + 77 148651817 PsycPRwf_R0025 - 16</sub> Met tRNA
1796175 1796250 + 76 148651817 PsycPRwf_R0026 - 13</sub> Val tRNA
1796289 1796365 + 77 148651817 PsycPRwf_R0027 - 06</sub> Asp tRNA
1821365 1821440 + 76 148651817 PsycPRwf_R0028 - 13</sub> Val tRNA
1821497 1821573 + 77 148651817 PsycPRwf_R0029 - 06</sub> Asp tRNA
1910150 1910225 + 76 148651817 PsycPRwf_R0030 - 07</sub> Asn tRNA
1910585 1910660 + 76 148651817 PsycPRwf_R0031 - 07</sub> Asn tRNA
1911466 1911556 + 91 148651817 PsycPRwf_R0032 - 08</sub> Ser tRNA
1911745 1911835 + 91 148651817 PsycPRwf_R0033 - 08</sub> Ser tRNA
2029442 2029796 + 355 148651817 PsycPRwf_R0034 - tmRNA
2031814 2031927 - 114 148651817 PsycPRwf_R0035 - SRP RNA; RNA component of signal recognition particle
2055921 2055996 + 76 148651817 PsycPRwf_R0036 - 04</sub> Glu tRNA
2056241 2056316 + 76 148651817 PsycPRwf_R0037 - 04</sub> Glu tRNA
2241199 2241283 + 85 148651817 PsycPRwf_R0038 - 15</sub> Leu tRNA
2241558 2241642 + 85 148651817 PsycPRwf_R0039 - 15</sub> Leu tRNA
2253108 2253181 + 74 148651817 PsycPRwf_R0040 - 19</sub> Cys tRNA
2253300 2253386 + 87 148651817 PsycPRwf_R0041 - 15</sub> Leu tRNA
2280867 2280942 + 76 148651817 PsycPRwf_R0042 - 10</sub> Lys tRNA
2281196 2281271 + 76 148651817 PsycPRwf_R0043 - 10</sub> Lys tRNA
2380096 2380182 + 87 148651817 PsycPRwf_R0044 - 15</sub> Leu tRNA
2526720 2526795 - 76 148651817 PsycPRwf_R0045 - 09</sub> His tRNA
2526852 2526928 - 77 148651817 PsycPRwf_R0046 - 11</sub> Arg tRNA
2527007 2527083 - 77 148651817 PsycPRwf_R0047 - 03</sub> Pro tRNA
2546100 2546175 - 76 148651817 PsycPRwf_R0048 - 20</sub> Trp tRNA
2548007 2548081 - 75 148651817 PsycPRwf_R0049 - 12</sub> Thr tRNA
2548107 2548180 - 74 148651817 PsycPRwf_R0050 - 01</sub> Gly tRNA
2548282 2548365 - 84 148651817 PsycPRwf_R0051 - 18</sub> Tyr tRNA
2548435 2548510 - 76 148651817 PsycPRwf_R0052 - 12</sub> Thr tRNA
2627330 2627405 + 76 148651817 PsycPRwf_R0053 - 05</sub> Gln tRNA
2627627 2627702 + 76 148651817 PsycPRwf_R0054 - 05</sub> Gln tRNA
2660779 2660896 - 118 148651817 PsycPRwf_R0055 - 5S ribosomal RNA
2661047 2663909 - 2863 148651817 PsycPRwf_R0056 - 23S ribosomal RNA
2664229 2664304 - 76 148651817 PsycPRwf_R0057 - 02</sub> Ala tRNA
2664315 2664391 - 77 148651817 PsycPRwf_R0058 - 14</sub> Ile tRNA
2664442 2665988 - 1547 148651817 PsycPRwf_R0059 - 16S ribosomal RNA
2803620 2803737 - 118 148651817 PsycPRwf_R0060 - 5S ribosomal RNA
2803889 2806751 - 2863 148651817 PsycPRwf_R0061 - 23S ribosomal RNA
2807071 2807146 - 76 148651817 PsycPRwf_R0062 - 02</sub> Ala tRNA
2807157 2807233 - 77 148651817 PsycPRwf_R0063 - 14</sub> Ile tRNA
2807284 2808830 - 1547 148651817 PsycPRwf_R0064 - 16S ribosomal RNA
2809513 2809630 - 118 148651817 PsycPRwf_R0065 - 5S ribosomal RNA
2809782 2812644 - 2863 148651817 PsycPRwf_R0066 - 23S ribosomal RNA
2812964 2813039 - 76 148651817 PsycPRwf_R0067 - 02</sub> Ala tRNA
2813050 2813126 - 77 148651817 PsycPRwf_R0068 - 14</sub> Ile tRNA
2813177 2814723 - 1547 148651817 PsycPRwf_R0069 - 16S ribosomal RNA
2815438 2815555 - 118 148651817 PsycPRwf_R0070 - 5S ribosomal RNA
2815707 2818569 - 2863 148651817 PsycPRwf_R0071 - 23S ribosomal RNA
2818889 2818964 - 76 148651817 PsycPRwf_R0072 - 02</sub> Ala tRNA
2818975 2819051 - 77 148651817 PsycPRwf_R0073 - 14</sub> Ile tRNA
2819102 2820648 - 1547 148651817 PsycPRwf_R0074 - 16S ribosomal RNA
2863153 2863243 + 91 148651817 PsycPRwf_R0075 - 08</sub> Ser tRNA