ФЭНДОМ


   LOCUS       NC_009633            4929566 bp    DNA     circular BCT 03-JUL-2007
   DEFINITION  Alkaliphilus metalliredigens QYMF, complete genome.
   ACCESSION   NC_009633
   VERSION     NC_009633.1  GI:150387853
   KEYWORDS    .
   SOURCE      Alkaliphilus metalliredigens QYMF
     ORGANISM  Alkaliphilus metalliredigens QYMF
               Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae;
               Alkaliphilus.
   REFERENCE   1  (bases 1 to 4929566)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Ye,Q., Zhou,J.,
               Fields,M. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Alkaliphilus metalliredigens QYMF
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4929566)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (03-JUL-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4929566)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Ye,Q., Zhou,J.,
               Fields,M. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (13-JUN-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000724.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634496
               Source DNA and bacteria available from Matthew Fields
               (matthew.fields@erc.montana.edu)
               Contacts: Matthew Fields (matthew.fields@erc.montana.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК Править

Начало Конец Направление Длина PID Ген COG Комментарий
11329 12849 + 1521 150387853 Amet_R0001 - 16S ribosomal RNA
13209 16143 + 2935 150387853 Amet_R0002 - 23S ribosomal RNA
16271 16386 + 116 150387853 Amet_R0003 - 5S ribosomal RNA
22384 23904 + 1521 150387853 Amet_R0004 - 16S ribosomal RNA
24268 27202 + 2935 150387853 Amet_R0005 - 23S ribosomal RNA
27463 27578 + 116 150387853 Amet_R0006 - 5S ribosomal RNA
38852 38928 + 77 150387853 Amet_R0007 - 11</sub> Arg tRNA
39483 39570 + 88 150387853 Amet_R0008 - 08</sub> Ser tRNA
39705 39805 + 101 150387853 Amet_R0009 - SRP RNA; RNA component of signal recognition particle
48874 50394 + 1521 150387853 Amet_R0010 - 16S ribosomal RNA
50461 50536 + 76 150387853 Amet_R0011 - 02</sub> Ala tRNA
50776 53710 + 2935 150387853 Amet_R0012 - 23S ribosomal RNA
53891 54006 + 116 150387853 Amet_R0013 - 5S ribosomal RNA
54401 55921 + 1521 150387853 Amet_R0014 - 16S ribosomal RNA
56089 56165 + 77 150387853 Amet_R0015 - 14</sub> Ile tRNA
56325 59259 + 2935 150387853 Amet_R0016 - 23S ribosomal RNA
59440 59555 + 116 150387853 Amet_R0017 - 5S ribosomal RNA
996643 996716 + 74 150387853 Amet_R0018 - 01</sub> Gly tRNA
996725 996801 + 77 150387853 Amet_R0019 - 11</sub> Arg tRNA
996844 996919 + 76 150387853 Amet_R0020 - 09</sub> His tRNA
996956 997031 + 76 150387853 Amet_R0021 - 09</sub> His tRNA
997036 997111 + 76 150387853 Amet_R0022 - 05</sub> Gln tRNA
997147 997223 + 77 150387853 Amet_R0023 - 11</sub> Arg tRNA
997239 997315 + 77 150387853 Amet_R0024 - 11</sub> Arg tRNA
1009021 1009100 + 80 150387853 Amet_R0025 - Xaa tRNA
1715308 1715383 + 76 150387853 Amet_R0026 - 13</sub> Val tRNA
1715384 1715459 + 76 150387853 Amet_R0027 - 17</sub> Phe tRNA
1715478 1715552 + 75 150387853 Amet_R0028 - 19</sub> Cys tRNA
1837188 1838708 + 1521 150387853 Amet_R0029 - 16S ribosomal RNA
1838777 1838852 + 76 150387853 Amet_R0030 - 02</sub> Ala tRNA
1839146 1842080 + 2935 150387853 Amet_R0031 - 23S ribosomal RNA
1842262 1842377 + 116 150387853 Amet_R0032 - 5S ribosomal RNA
1842385 1842459 + 75 150387853 Amet_R0033 - 07</sub> Asn tRNA
1842465 1842553 + 89 150387853 Amet_R0034 - 15</sub> Leu tRNA
1842569 1842644 + 76 150387853 Amet_R0035 - 16</sub> Met tRNA
1842650 1842726 + 77 150387853 Amet_R0036 - 16</sub> Met tRNA
1842736 1842810 + 75 150387853 Amet_R0037 - 04</sub> Glu tRNA
1842819 1842894 + 76 150387853 Amet_R0038 - 13</sub> Val tRNA
1843020 1843096 + 77 150387853 Amet_R0039 - 06</sub> Asp tRNA
1843166 1843250 + 85 150387853 Amet_R0040 - 18</sub> Tyr tRNA
1843290 1843372 + 83 150387853 Amet_R0041 - 15</sub> Leu tRNA
1843694 1843768 + 75 150387853 Amet_R0042 - 01</sub> Gly tRNA
1843781 1843856 + 76 150387853 Amet_R0043 - 09</sub> His tRNA
1843869 1843943 + 75 150387853 Amet_R0044 - 19</sub> Cys tRNA
1843948 1844024 + 77 150387853 Amet_R0045 - 11</sub> Arg tRNA
2399957 2400049 + 93 150387853 Amet_R0046 - Sec tRNA
2847478 2847546 - 69 150387853 Amet_R0047 - Xaa tRNA
2867783 2867859 - 77 150387853 Amet_R0048 - 03</sub> Pro tRNA
3018739 3019075 - 337 150387853 Amet_R0049 - RNA component of RNaseP
3165279 3165365 - 87 150387853 Amet_R0050 - 15</sub> Leu tRNA
3174464 3174550 + 87 150387853 Amet_R0051 - 15</sub> Leu tRNA
3221892 3221967 + 76 150387853 Amet_R0052 - 02</sub> Ala tRNA
3236999 3237075 - 77 150387853 Amet_R0053 - 13</sub> Val tRNA
3362100 3362174 - 75 150387853 Amet_R0054 - 12</sub> Thr tRNA
3659888 3660242 - 355 150387853 Amet_R0055 - tmRNA
4429238 4429313 - 76 150387853 Amet_R0056 - 17</sub> Phe tRNA
4429323 4429399 - 77 150387853 Amet_R0057 - 14</sub> Ile tRNA
4429405 4429480 - 76 150387853 Amet_R0058 - 10</sub> Lys tRNA
4429485 4429559 - 75 150387853 Amet_R0059 - 01</sub> Gly tRNA
4429587 4429669 - 83 150387853 Amet_R0060 - 15</sub> Leu tRNA
4429807 4429891 - 85 150387853 Amet_R0061 - 18</sub> Tyr tRNA
4429904 4429979 - 76 150387853 Amet_R0062 - 12</sub> Thr tRNA
4429993 4430069 - 77 150387853 Amet_R0063 - 06</sub> Asp tRNA
4430196 4430271 - 76 150387853 Amet_R0064 - 13</sub> Val tRNA
4430284 4430358 - 75 150387853 Amet_R0065 - 04</sub> Glu tRNA
4430365 4430440 - 76 150387853 Amet_R0066 - 16</sub> Met tRNA
4430456 4430544 - 89 150387853 Amet_R0067 - 15</sub> Leu tRNA
4430550 4430624 - 75 150387853 Amet_R0068 - 07</sub> Asn tRNA
4430632 4430747 - 116 150387853 Amet_R0069 - 5S ribosomal RNA
4430876 4433810 - 2935 150387853 Amet_R0070 - 23S ribosomal RNA
4434170 4435690 - 1521 150387853 Amet_R0071 - 16S ribosomal RNA
4436016 4436089 - 74 150387853 Amet_R0072 - 01</sub> Gly tRNA
4436098 4436173 - 76 150387853 Amet_R0073 - 12</sub> Thr tRNA
4436187 4436263 - 77 150387853 Amet_R0074 - 06</sub> Asp tRNA
4436276 4436352 - 77 150387853 Amet_R0075 - 16</sub> Met tRNA
4436436 4436511 - 76 150387853 Amet_R0076 - 16</sub> Met tRNA
4436589 4436664 - 76 150387853 Amet_R0077 - 17</sub> Phe tRNA
4436674 4436750 - 77 150387853 Amet_R0078 - 14</sub> Ile tRNA
4436756 4436832 - 77 150387853 Amet_R0079 - 03</sub> Pro tRNA
4436839 4436914 - 76 150387853 Amet_R0080 - 20</sub> Trp tRNA
4436937 4437013 - 77 150387853 Amet_R0081 - 16</sub> Met tRNA
4437028 4437104 - 77 150387853 Amet_R0082 - 03</sub> Pro tRNA
4437114 4437205 - 92 150387853 Amet_R0083 - 08</sub> Ser tRNA
4437220 4437308 - 89 150387853 Amet_R0084 - 08</sub> Ser tRNA
4437317 4437392 - 76 150387853 Amet_R0085 - 10</sub> Lys tRNA
4437397 4437472 - 76 150387853 Amet_R0086 - 05</sub> Gln tRNA
4437479 4437555 - 77 150387853 Amet_R0087 - 11</sub> Arg tRNA
4437564 4437637 - 74 150387853 Amet_R0088 - 01</sub> Gly tRNA
4437646 4437721 - 76 150387853 Amet_R0089 - 12</sub> Thr tRNA
4437735 4437811 - 77 150387853 Amet_R0090 - 06</sub> Asp tRNA
4437937 4438012 - 76 150387853 Amet_R0091 - 13</sub> Val tRNA
4438025 4438099 - 75 150387853 Amet_R0092 - 04</sub> Glu tRNA
4438106 4438181 - 76 150387853 Amet_R0093 - 16</sub> Met tRNA
4438249 4438364 - 116 150387853 Amet_R0094 - 5S ribosomal RNA
4438493 4441427 - 2935 150387853 Amet_R0095 - 23S ribosomal RNA
4441686 4443206 - 1521 150387853 Amet_R0096 - 16S ribosomal RNA
4444760 4444833 - 74 150387853 Amet_R0097 - 01</sub> Gly tRNA
4444870 4444946 - 77 150387853 Amet_R0098 - 16</sub> Met tRNA
4445030 4445105 - 76 150387853 Amet_R0099 - 16</sub> Met tRNA
4445183 4445258 - 76 150387853 Amet_R0100 - 17</sub> Phe tRNA
4445268 4445344 - 77 150387853 Amet_R0101 - 14</sub> Ile tRNA
4445350 4445426 - 77 150387853 Amet_R0102 - 03</sub> Pro tRNA
4445433 4445508 - 76 150387853 Amet_R0103 - 20</sub> Trp tRNA
4445531 4445607 - 77 150387853 Amet_R0104 - 16</sub> Met tRNA
4445622 4445698 - 77 150387853 Amet_R0105 - 03</sub> Pro tRNA
4445708 4445799 - 92 150387853 Amet_R0106 - 08</sub> Ser tRNA
4445814 4445902 - 89 150387853 Amet_R0107 - 08</sub> Ser tRNA
4445911 4445986 - 76 150387853 Amet_R0108 - 10</sub> Lys tRNA
4445991 4446065 - 75 150387853 Amet_R0109 - 01</sub> Gly tRNA
4446093 4446175 - 83 150387853 Amet_R0110 - 15</sub> Leu tRNA
4446260 4446344 - 85 150387853 Amet_R0111 - 18</sub> Tyr tRNA
4446357 4446432 - 76 150387853 Amet_R0112 - 12</sub> Thr tRNA
4446446 4446522 - 77 150387853 Amet_R0113 - 06</sub> Asp tRNA
4446648 4446723 - 76 150387853 Amet_R0114 - 13</sub> Val tRNA
4446736 4446810 - 75 150387853 Amet_R0115 - 04</sub> Glu tRNA
4446817 4446892 - 76 150387853 Amet_R0116 - 16</sub> Met tRNA
4446907 4446995 - 89 150387853 Amet_R0117 - 15</sub> Leu tRNA
4447001 4447075 - 75 150387853 Amet_R0118 - 07</sub> Asn tRNA
4447083 4447198 - 116 150387853 Amet_R0119 - 5S ribosomal RNA
4447380 4450314 - 2935 150387853 Amet_R0120 - 23S ribosomal RNA
4450484 4450559 - 76 150387853 Amet_R0121 - 02</sub> Ala tRNA
4450628 4452148 - 1521 150387853 Amet_R0122 - 16S ribosomal RNA
4452537 4452612 - 76 150387853 Amet_R0123 - 17</sub> Phe tRNA
4452622 4452698 - 77 150387853 Amet_R0124 - 14</sub> Ile tRNA
4452703 4452778 - 76 150387853 Amet_R0125 - 10</sub> Lys tRNA
4452783 4452858 - 76 150387853 Amet_R0126 - 05</sub> Gln tRNA
4452865 4452941 - 77 150387853 Amet_R0127 - 11</sub> Arg tRNA
4452950 4453023 - 74 150387853 Amet_R0128 - 01</sub> Gly tRNA
4453032 4453107 - 76 150387853 Amet_R0129 - 12</sub> Thr tRNA
4453241 4453316 - 76 150387853 Amet_R0130 - 13</sub> Val tRNA
4453329 4453403 - 75 150387853 Amet_R0131 - 04</sub> Glu tRNA
4453407 4453522 - 116 150387853 Amet_R0132 - 5S ribosomal RNA
4453686 4456620 - 2935 150387853 Amet_R0133 - 23S ribosomal RNA
4457012 4458532 - 1521 150387853 Amet_R0134 - 16S ribosomal RNA
4628340 4628455 - 116 150387853 Amet_R0135 - 5S ribosomal RNA
4628636 4631570 - 2935 150387853 Amet_R0136 - 23S ribosomal RNA
4631934 4633454 - 1521 150387853 Amet_R0137 - 16S ribosomal RNA
4894590 4894664 - 75 150387853 Amet_R0138 - 04</sub> Glu tRNA
4894718 4894793 - 76 150387853 Amet_R0139 - 10</sub> Lys tRNA