ФЭНДОМ


   LOCUS       NC_009655            2319663 bp    DNA     circular BCT 25-JUL-2007
   DEFINITION  Actinobacillus succinogenes 130Z, complete genome.
   ACCESSION   NC_009655
   VERSION     NC_009655.1  GI:152977688
   KEYWORDS    .
   SOURCE      Actinobacillus succinogenes 130Z
     ORGANISM  Actinobacillus succinogenes 130Z
               Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales;
               Pasteurellaceae; Actinobacillus.
   REFERENCE   1  (bases 1 to 2319663)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Lowry,S., Clum,A., Schmutz,J.,
               Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Vieille,C.
               and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Actinobacillus succinogenes 130Z
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 2319663)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (24-JUL-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2319663)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Lowry,S., Clum,A., Schmutz,J.,
               Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Vieille,C.
               and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (25-JUN-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000746.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000129
               Source DNA and bacteria available from Claire Vieille
               (vieille@msu.edu)
               Contacts: Claire Vieille (vieille@msu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-PGF
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК Править

Начало Конец Направление Длина PID Ген COG Комментарий
33508 33583 - 76 152977688 Asuc_R0001 - 20</sub> Trp tRNA
33602 33678 - 77 152977688 Asuc_R0002 - 06</sub> Asp tRNA
33689 33803 - 115 152977688 Asuc_R0003 - 5S ribosomal RNA
33855 33969 - 115 152977688 Asuc_R0004 - 5S ribosomal RNA
34076 37071 - 2996 152977688 Asuc_R0005 - 23S ribosomal RNA
37365 37440 - 76 152977688 Asuc_R0006 - 02</sub> Ala tRNA
37511 37587 - 77 152977688 Asuc_R0007 - 14</sub> Ile tRNA
37671 39205 - 1535 152977688 Asuc_R0008 - 16S ribosomal RNA
111891 111966 - 76 152977688 Asuc_R0009 - 12</sub> Thr tRNA
111971 112045 - 75 152977688 Asuc_R0010 - 01</sub> Gly tRNA
112082 112166 - 85 152977688 Asuc_R0011 - 18</sub> Tyr tRNA
112194 112269 - 76 152977688 Asuc_R0012 - 12</sub> Thr tRNA
319151 319265 - 115 152977688 Asuc_R0013 - 5S ribosomal RNA
319372 322367 - 2996 152977688 Asuc_R0014 - 23S ribosomal RNA
322661 322736 - 76 152977688 Asuc_R0015 - 02</sub> Ala tRNA
322807 322883 - 77 152977688 Asuc_R0016 - 14</sub> Ile tRNA
322967 324501 - 1535 152977688 Asuc_R0017 - 16S ribosomal RNA
334332 334422 - 91 152977688 Asuc_R0018 - Sec tRNA
562856 564391 + 1536 152977688 Asuc_R0019 - 16S ribosomal RNA
564543 564618 + 76 152977688 Asuc_R0020 - 04</sub> Glu tRNA
564837 567832 + 2996 152977688 Asuc_R0021 - 23S ribosomal RNA
567939 568053 + 115 152977688 Asuc_R0022 - 5S ribosomal RNA
596425 596500 + 76 152977688 Asuc_R0023 - 17</sub> Phe tRNA
596506 596581 + 76 152977688 Asuc_R0024 - 07</sub> Asn tRNA
613532 613607 - 76 152977688 Asuc_R0025 - 02</sub> Ala tRNA
615299 615374 + 76 152977688 Asuc_R0026 - 13</sub> Val tRNA
615426 615501 + 76 152977688 Asuc_R0027 - 13</sub> Val tRNA
615616 615691 + 76 152977688 Asuc_R0028 - 13</sub> Val tRNA
742664 742757 + 94 152977688 Asuc_R0029 - 08</sub> Ser tRNA
742800 742876 + 77 152977688 Asuc_R0030 - 11</sub> Arg tRNA
742943 743019 + 77 152977688 Asuc_R0031 - 11</sub> Arg tRNA
769187 769262 - 76 152977688 Asuc_R0032 - 12</sub> Thr tRNA
821154 821230 - 77 152977688 Asuc_R0033 - 11</sub> Arg tRNA
821283 821359 - 77 152977688 Asuc_R0034 - 03</sub> Pro tRNA
911481 913016 + 1536 152977688 Asuc_R0035 - 16S ribosomal RNA
913168 913243 + 76 152977688 Asuc_R0036 - 04</sub> Glu tRNA
913462 916457 + 2996 152977688 Asuc_R0037 - 23S ribosomal RNA
916564 916678 + 115 152977688 Asuc_R0038 - 5S ribosomal RNA
938187 938263 - 77 152977688 Asuc_R0039 - 06</sub> Asp tRNA
938298 938374 - 77 152977688 Asuc_R0040 - 06</sub> Asp tRNA
973632 973721 - 90 152977688 Asuc_R0041 - 08</sub> Ser tRNA
998788 998864 - 77 152977688 Asuc_R0042 - 16</sub> Met tRNA
1024112 1024198 + 87 152977688 Asuc_R0043 - 15</sub> Leu tRNA
1071626 1071701 - 76 152977688 Asuc_R0044 - 01</sub> Gly tRNA
1083338 1083427 + 90 152977688 Asuc_R0045 - 08</sub> Ser tRNA
1130125 1130201 + 77 152977688 Asuc_R0046 - 11</sub> Arg tRNA
1130231 1130306 + 76 152977688 Asuc_R0047 - 09</sub> His tRNA
1130328 1130404 + 77 152977688 Asuc_R0048 - 03</sub> Pro tRNA
1130551 1132085 + 1535 152977688 Asuc_R0049 - 16S ribosomal RNA
1132169 1132245 + 77 152977688 Asuc_R0050 - 14</sub> Ile tRNA
1132316 1132391 + 76 152977688 Asuc_R0051 - 02</sub> Ala tRNA
1132685 1135680 + 2996 152977688 Asuc_R0052 - 23S ribosomal RNA
1135787 1135901 + 115 152977688 Asuc_R0053 - 5S ribosomal RNA
1180496 1182031 + 1536 152977688 Asuc_R0054 - 16S ribosomal RNA
1182183 1182258 + 76 152977688 Asuc_R0055 - 04</sub> Glu tRNA
1182477 1185472 + 2996 152977688 Asuc_R0056 - 23S ribosomal RNA
1185579 1185693 + 115 152977688 Asuc_R0057 - 5S ribosomal RNA
1202474 1202550 + 77 152977688 Asuc_R0058 - 16</sub> Met tRNA
1202570 1202652 + 83 152977688 Asuc_R0059 - 15</sub> Leu tRNA
1202681 1202755 + 75 152977688 Asuc_R0060 - 05</sub> Gln tRNA
1202798 1202872 + 75 152977688 Asuc_R0061 - 05</sub> Gln tRNA
1202915 1202989 + 75 152977688 Asuc_R0062 - 05</sub> Gln tRNA
1206949 1207024 + 76 152977688 Asuc_R0063 - 07</sub> Asn tRNA
1215624 1215740 - 117 152977688 Asuc_R0064 - SRP RNA; RNA component of signal recognition particle
1242492 1242568 + 77 152977688 Asuc_R0065 - 16</sub> Met tRNA
1365161 1365236 - 76 152977688 Asuc_R0066 - 10</sub> Lys tRNA
1402662 1403027 - 366 152977688 Asuc_R0067 - tmRNA
1523540 1523614 + 75 152977688 Asuc_R0068 - 10</sub> Lys tRNA
1582718 1582794 - 77 152977688 Asuc_R0069 - 13</sub> Val tRNA
1657240 1657325 - 86 152977688 Asuc_R0070 - 15</sub> Leu tRNA
1833882 1834174 - 293 152977688 Asuc_R0071 - RNA component of RNaseP
1876119 1876204 + 86 152977688 Asuc_R0072 - 15</sub> Leu tRNA
1922674 1922749 + 76 152977688 Asuc_R0073 - 01</sub> Gly tRNA
1922779 1922865 + 87 152977688 Asuc_R0074 - 15</sub> Leu tRNA
1968993 1969068 - 76 152977688 Asuc_R0075 - 10</sub> Lys tRNA
1969097 1969172 - 76 152977688 Asuc_R0076 - 10</sub> Lys tRNA
1969202 1969277 - 76 152977688 Asuc_R0077 - 10</sub> Lys tRNA
2030325 2030400 + 76 152977688 Asuc_R0078 - 01</sub> Gly tRNA
2030418 2030504 + 87 152977688 Asuc_R0079 - 15</sub> Leu tRNA
2030564 2030637 + 74 152977688 Asuc_R0080 - 19</sub> Cys tRNA
2211790 2211865 - 76 152977688 Asuc_R0081 - 16</sub> Met tRNA
2261239 2261328 - 90 152977688 Asuc_R0082 - 08</sub> Ser tRNA