ФЭНДОМ


   LOCUS       NC_009674            4087024 bp    DNA     circular BCT 25-JUL-2007
   DEFINITION  Bacillus cereus subsp. cytotoxis NVH 391-98, complete genome.
   ACCESSION   NC_009674
   VERSION     NC_009674.1  GI:152973854
   KEYWORDS    .
   SOURCE      Bacillus cereus subsp. cytotoxis NVH 391-98
     ORGANISM  Bacillus cereus subsp. cytotoxis NVH 391-98
               Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus
               cereus group.
   REFERENCE   1  (bases 1 to 4087024)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Foster,B., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Kim,E., Richardson,P., Auger,S., Galleron,N., Sanchis,V., Gohar,M.,
               Broussole,V., Brillard,J., Guinebretiere,M.-H., Ehrlich,S.D.,
               Lereclus,D., Aymerich,S., Nguen-the,C. and Sorokin,A.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Bacillus cereus subsp. cytotoxis
               NVH 391-98
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4087024)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (24-JUL-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4087024)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Foster,B., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Kim,E., Richardson,P., Auger,S., Galleron,N., Sanchis,V., Gohar,M.,
               Broussole,V., Brillard,J., Guinebretiere,M.-H., Ehrlich,S.D.,
               Lereclus,D., Aymerich,S., Nguen-the,C. and Sorokin,A.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (10-JUL-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000764.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000557
               Source DNA and bacteria available from Alexei Sorokin
               (alexei.sorokine@jouy.inra.fr)
               Contacts: Alexei Sorokin (alexei.sorokine@jouy.inra.fr)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Finishing done by JGI-PGF
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of a least two independent clones. Each
               base pair has a minumum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376)
               Additional notes:
               Bacillus cereus NVH 398-91 was originally isolated as a contaminant
               of vegetable puree in a retirement house in Essone (France) by
               Marie-Laure De Buyser (AFSSA, France). The strain was identified as
               a cause of a severe food poisoning case. It was further
               characterized biochemically and a novel cytotoxin K was identified
               as a major cause of epithelial cell lysis leading to necrotic
               enteritis (Lund et al, Mol Microbiol, 2000, 38, 254). Although the
               strain was identified as Bacillus cereus, it appeared to be
               different from all known strains. Detailed phylogenetic studies
               using MLST approach placed the strain rather far from main strain
               clusters, but confirmed that the strain belongs to the B. cereus
               group (Sorokin et al, Appl Env Microbiol, 2006, 72, 1569). Genomic
               sequence clearly indicated that the strain is very different from
               other representatives of the group and should be assigned a new
               species status, for which we propose a name Bacillus cytotoxis.
               However, assigning of the novel species status is hampered by the
               fact that only one such strain is described at the moment of
               genomic sequencing being done (2005).
               COMPLETENESS: full length.


Расположение РНК Править

Начало Конец Направление Длина PID Ген COG Комментарий
9424 10967 + 1544 152973854 Bcer98_R0001 - 16S ribosomal RNA
11102 11178 + 77 152973854 Bcer98_R0002 - 14</sub> Ile tRNA
11187 11262 + 76 152973854 Bcer98_R0003 - 02</sub> Ala tRNA
11352 14259 + 2908 152973854 Bcer98_R0004 - 23S ribosomal RNA
14357 14471 + 115 152973854 Bcer98_R0005 - 5S ribosomal RNA
21927 22019 + 93 152973854 Bcer98_R0006 - 08</sub> Ser tRNA
25353 25456 + 104 152973854 Bcer98_R0007 - SRP RNA; RNA component of signal recognition particle
29256 30799 + 1544 152973854 Bcer98_R0008 - 16S ribosomal RNA
30934 31010 + 77 152973854 Bcer98_R0009 - 14</sub> Ile tRNA
31019 31094 + 76 152973854 Bcer98_R0010 - 02</sub> Ala tRNA
31184 34090 + 2907 152973854 Bcer98_R0011 - 23S ribosomal RNA
34187 34301 + 115 152973854 Bcer98_R0012 - 5S ribosomal RNA
64784 64857 + 74 152973854 Bcer98_R0013 - 16</sub> Met tRNA
64872 64943 + 72 152973854 Bcer98_R0014 - 04</sub> Glu tRNA
82758 84301 + 1544 152973854 Bcer98_R0015 - 16S ribosomal RNA
84563 87469 + 2907 152973854 Bcer98_R0016 - 23S ribosomal RNA
87618 87732 + 115 152973854 Bcer98_R0017 - 5S ribosomal RNA
87736 87811 + 76 152973854 Bcer98_R0018 - 13</sub> Val tRNA
87817 87892 + 76 152973854 Bcer98_R0019 - 12</sub> Thr tRNA
87903 87978 + 76 152973854 Bcer98_R0020 - 10</sub> Lys tRNA
87993 88073 + 81 152973854 Bcer98_R0021 - 15</sub> Leu tRNA
88103 88177 + 75 152973854 Bcer98_R0022 - 01</sub> Gly tRNA
88188 88276 + 89 152973854 Bcer98_R0023 - 15</sub> Leu tRNA
88280 88353 + 74 152973854 Bcer98_R0024 - 11</sub> Arg tRNA
88362 88435 + 74 152973854 Bcer98_R0025 - 03</sub> Pro tRNA
88446 88521 + 76 152973854 Bcer98_R0026 - 02</sub> Ala tRNA
88601 90144 + 1544 152973854 Bcer98_R0027 - 16S ribosomal RNA
90405 93311 + 2907 152973854 Bcer98_R0028 - 23S ribosomal RNA
93408 93522 + 115 152973854 Bcer98_R0029 - 5S ribosomal RNA
151867 153410 + 1544 152973854 Bcer98_R0030 - 16S ribosomal RNA
153672 156578 + 2907 152973854 Bcer98_R0031 - 23S ribosomal RNA
156728 156842 + 115 152973854 Bcer98_R0032 - 5S ribosomal RNA
156850 156924 + 75 152973854 Bcer98_R0033 - 07</sub> Asn tRNA
156929 157001 + 73 152973854 Bcer98_R0034 - 12</sub> Thr tRNA
157025 157099 + 75 152973854 Bcer98_R0035 - 04</sub> Glu tRNA
157105 157180 + 76 152973854 Bcer98_R0036 - 13</sub> Val tRNA
157190 157273 + 84 152973854 Bcer98_R0037 - 18</sub> Tyr tRNA
157337 157411 + 75 152973854 Bcer98_R0038 - 05</sub> Gln tRNA
157417 157492 + 76 152973854 Bcer98_R0039 - 10</sub> Lys tRNA
157498 157569 + 72 152973854 Bcer98_R0040 - 01</sub> Gly tRNA
157580 157652 + 73 152973854 Bcer98_R0041 - 02</sub> Ala tRNA
255339 255410 + 72 152973854 Bcer98_R0042 - 07</sub> Asn tRNA
255417 255507 + 91 152973854 Bcer98_R0043 - 08</sub> Ser tRNA
255514 255588 + 75 152973854 Bcer98_R0044 - 04</sub> Glu tRNA
255594 255669 + 76 152973854 Bcer98_R0045 - 13</sub> Val tRNA
255705 255780 + 76 152973854 Bcer98_R0046 - 06</sub> Asp tRNA
255855 255929 + 75 152973854 Bcer98_R0047 - 05</sub> Gln tRNA
255935 256007 + 73 152973854 Bcer98_R0048 - 10</sub> Lys tRNA
256023 256103 + 81 152973854 Bcer98_R0049 - 15</sub> Leu tRNA
256107 256192 + 86 152973854 Bcer98_R0050 - 15</sub> Leu tRNA
256284 256360 + 77 152973854 Bcer98_R0051 - 11</sub> Arg tRNA
256365 256441 + 77 152973854 Bcer98_R0052 - 03</sub> Pro tRNA
256443 256513 + 71 152973854 Bcer98_R0053 - 01</sub> Gly tRNA
256593 258136 + 1544 152973854 Bcer98_R0054 - 16S ribosomal RNA
258398 261304 + 2907 152973854 Bcer98_R0055 - 23S ribosomal RNA
261401 261515 + 115 152973854 Bcer98_R0056 - 5S ribosomal RNA
261525 261601 + 77 152973854 Bcer98_R0057 - 16</sub> Met tRNA
261605 261680 + 76 152973854 Bcer98_R0058 - 06</sub> Asp tRNA
277345 278888 + 1544 152973854 Bcer98_R0059 - 16S ribosomal RNA
279156 282063 + 2908 152973854 Bcer98_R0060 - 23S ribosomal RNA
282161 282275 + 115 152973854 Bcer98_R0061 - 5S ribosomal RNA
285014 286557 + 1544 152973854 Bcer98_R0062 - 16S ribosomal RNA
286819 289726 + 2908 152973854 Bcer98_R0063 - 23S ribosomal RNA
289824 289938 + 115 152973854 Bcer98_R0064 - 5S ribosomal RNA
295269 296812 + 1544 152973854 Bcer98_R0065 - 16S ribosomal RNA
297075 299981 + 2907 152973854 Bcer98_R0066 - 23S ribosomal RNA
300078 300192 + 115 152973854 Bcer98_R0067 - 5S ribosomal RNA
302785 304328 + 1544 152973854 Bcer98_R0068 - 16S ribosomal RNA
304590 307497 + 2908 152973854 Bcer98_R0069 - 23S ribosomal RNA
307595 307709 + 115 152973854 Bcer98_R0070 - 5S ribosomal RNA
515522 517065 + 1544 152973854 Bcer98_R0071 - 16S ribosomal RNA
517327 520233 + 2907 152973854 Bcer98_R0072 - 23S ribosomal RNA
520387 520501 + 115 152973854 Bcer98_R0073 - 5S ribosomal RNA
520509 520583 + 75 152973854 Bcer98_R0074 - 07</sub> Asn tRNA
520589 520680 + 92 152973854 Bcer98_R0075 - 08</sub> Ser tRNA
520693 520767 + 75 152973854 Bcer98_R0076 - 04</sub> Glu tRNA
520773 520848 + 76 152973854 Bcer98_R0077 - 13</sub> Val tRNA
520872 520948 + 77 152973854 Bcer98_R0078 - 16</sub> Met tRNA
520952 521027 + 76 152973854 Bcer98_R0079 - 06</sub> Asp tRNA
521036 521111 + 76 152973854 Bcer98_R0080 - 17</sub> Phe tRNA
521126 521201 + 76 152973854 Bcer98_R0081 - 12</sub> Thr tRNA
521211 521294 + 84 152973854 Bcer98_R0082 - 18</sub> Tyr tRNA
521302 521375 + 74 152973854 Bcer98_R0083 - 20</sub> Trp tRNA
521386 521461 + 76 152973854 Bcer98_R0084 - 09</sub> His tRNA
521575 521649 + 75 152973854 Bcer98_R0085 - 05</sub> Gln tRNA
521654 521728 + 75 152973854 Bcer98_R0086 - 01</sub> Gly tRNA
521739 521809 + 71 152973854 Bcer98_R0087 - 19</sub> Cys tRNA
521821 521902 + 82 152973854 Bcer98_R0088 - 15</sub> Leu tRNA
529172 529245 + 74 152973854 Bcer98_R0089 - 01</sub> Gly tRNA
691784 693327 + 1544 152973854 Bcer98_R0090 - 16S ribosomal RNA
693589 696495 + 2907 152973854 Bcer98_R0091 - 23S ribosomal RNA
696722 696836 + 115 152973854 Bcer98_R0092 - 5S ribosomal RNA
696840 696915 + 76 152973854 Bcer98_R0093 - 13</sub> Val tRNA
696925 697008 + 84 152973854 Bcer98_R0094 - 18</sub> Tyr tRNA
697019 697093 + 75 152973854 Bcer98_R0095 - 05</sub> Gln tRNA
697099 697174 + 76 152973854 Bcer98_R0096 - 10</sub> Lys tRNA
697188 697268 + 81 152973854 Bcer98_R0097 - 15</sub> Leu tRNA
697298 697372 + 75 152973854 Bcer98_R0098 - 01</sub> Gly tRNA
697383 697471 + 89 152973854 Bcer98_R0099 - 15</sub> Leu tRNA
697475 697551 + 77 152973854 Bcer98_R0100 - 11</sub> Arg tRNA
697556 697629 + 74 152973854 Bcer98_R0101 - 03</sub> Pro tRNA
697640 697712 + 73 152973854 Bcer98_R0102 - 02</sub> Ala tRNA
697727 697819 + 93 152973854 Bcer98_R0103 - 08</sub> Ser tRNA
697879 697968 + 90 152973854 Bcer98_R0104 - 08</sub> Ser tRNA
697988 698064 + 77 152973854 Bcer98_R0105 - 16</sub> Met tRNA
698068 698143 + 76 152973854 Bcer98_R0106 - 06</sub> Asp tRNA
698152 698227 + 76 152973854 Bcer98_R0107 - 17</sub> Phe tRNA
698242 698314 + 73 152973854 Bcer98_R0108 - 12</sub> Thr tRNA
698321 698391 + 71 152973854 Bcer98_R0109 - 20</sub> Trp tRNA
698403 698479 + 77 152973854 Bcer98_R0110 - 14</sub> Ile tRNA
698486 698560 + 75 152973854 Bcer98_R0111 - 07</sub> Asn tRNA
698562 698633 + 72 152973854 Bcer98_R0112 - 04</sub> Glu tRNA
1112860 1112932 - 73 152973854 Bcer98_R0113 - 13</sub> Val tRNA
1387173 1387525 + 353 152973854 Bcer98_R0114 - RNA component of RNaseP
3053375 3053448 - 74 152973854 Bcer98_R0115 - 16</sub> Met tRNA
3270012 3270088 - 77 152973854 Bcer98_R0116 - 11</sub> Arg tRNA
3270090 3270163 - 74 152973854 Bcer98_R0117 - 01</sub> Gly tRNA
3569879 3569950 - 72 152973854 Bcer98_R0118 - 04</sub> Glu tRNA
3569958 3570048 - 91 152973854 Bcer98_R0119 - 08</sub> Ser tRNA
3570053 3570127 - 75 152973854 Bcer98_R0120 - 07</sub> Asn tRNA
3570132 3570208 - 77 152973854 Bcer98_R0121 - 14</sub> Ile tRNA
3570220 3570290 - 71 152973854 Bcer98_R0122 - 01</sub> Gly tRNA
3570304 3570379 - 76 152973854 Bcer98_R0123 - 10</sub> Lys tRNA
3570390 3570465 - 76 152973854 Bcer98_R0124 - 12</sub> Thr tRNA
3570480 3570555 - 76 152973854 Bcer98_R0125 - 17</sub> Phe tRNA
3570565 3570640 - 76 152973854 Bcer98_R0126 - 06</sub> Asp tRNA
3570642 3570718 - 77 152973854 Bcer98_R0127 - 16</sub> Met tRNA
3570738 3570830 - 93 152973854 Bcer98_R0128 - 08</sub> Ser tRNA
3570848 3570924 - 77 152973854 Bcer98_R0129 - 16</sub> Met tRNA
3570929 3571005 - 77 152973854 Bcer98_R0130 - 16</sub> Met tRNA
3571023 3571095 - 73 152973854 Bcer98_R0131 - 02</sub> Ala tRNA
3571110 3571183 - 74 152973854 Bcer98_R0132 - 03</sub> Pro tRNA
3571192 3571265 - 74 152973854 Bcer98_R0133 - 11</sub> Arg tRNA
3571269 3571357 - 89 152973854 Bcer98_R0134 - 15</sub> Leu tRNA
3571368 3571442 - 75 152973854 Bcer98_R0135 - 01</sub> Gly tRNA
3571472 3571552 - 81 152973854 Bcer98_R0136 - 15</sub> Leu tRNA
3571571 3571646 - 76 152973854 Bcer98_R0137 - 09</sub> His tRNA
3571656 3571731 - 76 152973854 Bcer98_R0138 - 12</sub> Thr tRNA
3571737 3571812 - 76 152973854 Bcer98_R0139 - 13</sub> Val tRNA
3571816 3571930 - 115 152973854 Bcer98_R0140 - 5S ribosomal RNA
3572079 3574985 - 2907 152973854 Bcer98_R0141 - 23S ribosomal RNA
3575247 3576790 - 1544 152973854 Bcer98_R0142 - 16S ribosomal RNA
3731017 3731374 - 358 152973854 Bcer98_R0143 - tmRNA
3746250 3746328 - 79 152973854 Bcer98_R0144 - 11</sub> Arg tRNA
4065917 4065989 - 73 152973854 Bcer98_R0145 - 17</sub> Phe tRNA
4066032 4066107 - 76 152973854 Bcer98_R0146 - 06</sub> Asp tRNA
4066120 4066191 - 72 152973854 Bcer98_R0147 - 04</sub> Glu tRNA
4066205 4066280 - 76 152973854 Bcer98_R0148 - 10</sub> Lys tRNA