LOCUS NC_009674 4087024 bp DNA circular BCT 25-JUL-2007
DEFINITION Bacillus cereus subsp. cytotoxis NVH 391-98, complete genome.
ACCESSION NC_009674
VERSION NC_009674.1 GI:152973854
KEYWORDS .
SOURCE Bacillus cereus subsp. cytotoxis NVH 391-98
ORGANISM Bacillus cereus subsp. cytotoxis NVH 391-98
Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus
cereus group.
REFERENCE 1 (bases 1 to 4087024)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Foster,B., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Kim,E., Richardson,P., Auger,S., Galleron,N., Sanchis,V., Gohar,M.,
Broussole,V., Brillard,J., Guinebretiere,M.-H., Ehrlich,S.D.,
Lereclus,D., Aymerich,S., Nguen-the,C. and Sorokin,A.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome of Bacillus cereus subsp. cytotoxis
NVH 391-98
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4087024)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (24-JUL-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4087024)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Foster,B., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Kim,E., Richardson,P., Auger,S., Galleron,N., Sanchis,V., Gohar,M.,
Broussole,V., Brillard,J., Guinebretiere,M.-H., Ehrlich,S.D.,
Lereclus,D., Aymerich,S., Nguen-the,C. and Sorokin,A.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2007) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000764.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4000557
Source DNA and bacteria available from Alexei Sorokin
(alexei.sorokine@jouy.inra.fr)
Contacts: Alexei Sorokin (alexei.sorokine@jouy.inra.fr)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Finishing done by JGI-PGF
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of a least two independent clones. Each
base pair has a minumum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Additional notes:
Bacillus cereus NVH 398-91 was originally isolated as a contaminant
of vegetable puree in a retirement house in Essone (France) by
Marie-Laure De Buyser (AFSSA, France). The strain was identified as
a cause of a severe food poisoning case. It was further
characterized biochemically and a novel cytotoxin K was identified
as a major cause of epithelial cell lysis leading to necrotic
enteritis (Lund et al, Mol Microbiol, 2000, 38, 254). Although the
strain was identified as Bacillus cereus, it appeared to be
different from all known strains. Detailed phylogenetic studies
using MLST approach placed the strain rather far from main strain
clusters, but confirmed that the strain belongs to the B. cereus
group (Sorokin et al, Appl Env Microbiol, 2006, 72, 1569). Genomic
sequence clearly indicated that the strain is very different from
other representatives of the group and should be assigned a new
species status, for which we propose a name Bacillus cytotoxis.
However, assigning of the novel species status is hampered by the
fact that only one such strain is described at the moment of
genomic sequencing being done (2005).
COMPLETENESS: full length.
Расположение РНК[]
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 9424 | 10967 | + | 1544 | 152973854 | Bcer98_R0001 | - | 16S ribosomal RNA |
| 11102 | 11178 | + | 77 | 152973854 | Bcer98_R0002 | - | 14 Ile tRNA |
| 11187 | 11262 | + | 76 | 152973854 | Bcer98_R0003 | - | 02 Ala tRNA |
| 11352 | 14259 | + | 2908 | 152973854 | Bcer98_R0004 | - | 23S ribosomal RNA |
| 14357 | 14471 | + | 115 | 152973854 | Bcer98_R0005 | - | 5S ribosomal RNA |
| 21927 | 22019 | + | 93 | 152973854 | Bcer98_R0006 | - | 08 Ser tRNA |
| 25353 | 25456 | + | 104 | 152973854 | Bcer98_R0007 | - | SRP RNA; RNA component of signal recognition particle |
| 29256 | 30799 | + | 1544 | 152973854 | Bcer98_R0008 | - | 16S ribosomal RNA |
| 30934 | 31010 | + | 77 | 152973854 | Bcer98_R0009 | - | 14 Ile tRNA |
| 31019 | 31094 | + | 76 | 152973854 | Bcer98_R0010 | - | 02 Ala tRNA |
| 31184 | 34090 | + | 2907 | 152973854 | Bcer98_R0011 | - | 23S ribosomal RNA |
| 34187 | 34301 | + | 115 | 152973854 | Bcer98_R0012 | - | 5S ribosomal RNA |
| 64784 | 64857 | + | 74 | 152973854 | Bcer98_R0013 | - | 16 Met tRNA |
| 64872 | 64943 | + | 72 | 152973854 | Bcer98_R0014 | - | 04 Glu tRNA |
| 82758 | 84301 | + | 1544 | 152973854 | Bcer98_R0015 | - | 16S ribosomal RNA |
| 84563 | 87469 | + | 2907 | 152973854 | Bcer98_R0016 | - | 23S ribosomal RNA |
| 87618 | 87732 | + | 115 | 152973854 | Bcer98_R0017 | - | 5S ribosomal RNA |
| 87736 | 87811 | + | 76 | 152973854 | Bcer98_R0018 | - | 13 Val tRNA |
| 87817 | 87892 | + | 76 | 152973854 | Bcer98_R0019 | - | 12 Thr tRNA |
| 87903 | 87978 | + | 76 | 152973854 | Bcer98_R0020 | - | 10 Lys tRNA |
| 87993 | 88073 | + | 81 | 152973854 | Bcer98_R0021 | - | 15 Leu tRNA |
| 88103 | 88177 | + | 75 | 152973854 | Bcer98_R0022 | - | 01 Gly tRNA |
| 88188 | 88276 | + | 89 | 152973854 | Bcer98_R0023 | - | 15 Leu tRNA |
| 88280 | 88353 | + | 74 | 152973854 | Bcer98_R0024 | - | 11 Arg tRNA |
| 88362 | 88435 | + | 74 | 152973854 | Bcer98_R0025 | - | 03 Pro tRNA |
| 88446 | 88521 | + | 76 | 152973854 | Bcer98_R0026 | - | 02 Ala tRNA |
| 88601 | 90144 | + | 1544 | 152973854 | Bcer98_R0027 | - | 16S ribosomal RNA |
| 90405 | 93311 | + | 2907 | 152973854 | Bcer98_R0028 | - | 23S ribosomal RNA |
| 93408 | 93522 | + | 115 | 152973854 | Bcer98_R0029 | - | 5S ribosomal RNA |
| 151867 | 153410 | + | 1544 | 152973854 | Bcer98_R0030 | - | 16S ribosomal RNA |
| 153672 | 156578 | + | 2907 | 152973854 | Bcer98_R0031 | - | 23S ribosomal RNA |
| 156728 | 156842 | + | 115 | 152973854 | Bcer98_R0032 | - | 5S ribosomal RNA |
| 156850 | 156924 | + | 75 | 152973854 | Bcer98_R0033 | - | 07 Asn tRNA |
| 156929 | 157001 | + | 73 | 152973854 | Bcer98_R0034 | - | 12 Thr tRNA |
| 157025 | 157099 | + | 75 | 152973854 | Bcer98_R0035 | - | 04 Glu tRNA |
| 157105 | 157180 | + | 76 | 152973854 | Bcer98_R0036 | - | 13 Val tRNA |
| 157190 | 157273 | + | 84 | 152973854 | Bcer98_R0037 | - | 18 Tyr tRNA |
| 157337 | 157411 | + | 75 | 152973854 | Bcer98_R0038 | - | 05 Gln tRNA |
| 157417 | 157492 | + | 76 | 152973854 | Bcer98_R0039 | - | 10 Lys tRNA |
| 157498 | 157569 | + | 72 | 152973854 | Bcer98_R0040 | - | 01 Gly tRNA |
| 157580 | 157652 | + | 73 | 152973854 | Bcer98_R0041 | - | 02 Ala tRNA |
| 255339 | 255410 | + | 72 | 152973854 | Bcer98_R0042 | - | 07 Asn tRNA |
| 255417 | 255507 | + | 91 | 152973854 | Bcer98_R0043 | - | 08 Ser tRNA |
| 255514 | 255588 | + | 75 | 152973854 | Bcer98_R0044 | - | 04 Glu tRNA |
| 255594 | 255669 | + | 76 | 152973854 | Bcer98_R0045 | - | 13 Val tRNA |
| 255705 | 255780 | + | 76 | 152973854 | Bcer98_R0046 | - | 06 Asp tRNA |
| 255855 | 255929 | + | 75 | 152973854 | Bcer98_R0047 | - | 05 Gln tRNA |
| 255935 | 256007 | + | 73 | 152973854 | Bcer98_R0048 | - | 10 Lys tRNA |
| 256023 | 256103 | + | 81 | 152973854 | Bcer98_R0049 | - | 15 Leu tRNA |
| 256107 | 256192 | + | 86 | 152973854 | Bcer98_R0050 | - | 15 Leu tRNA |
| 256284 | 256360 | + | 77 | 152973854 | Bcer98_R0051 | - | 11 Arg tRNA |
| 256365 | 256441 | + | 77 | 152973854 | Bcer98_R0052 | - | 03 Pro tRNA |
| 256443 | 256513 | + | 71 | 152973854 | Bcer98_R0053 | - | 01 Gly tRNA |
| 256593 | 258136 | + | 1544 | 152973854 | Bcer98_R0054 | - | 16S ribosomal RNA |
| 258398 | 261304 | + | 2907 | 152973854 | Bcer98_R0055 | - | 23S ribosomal RNA |
| 261401 | 261515 | + | 115 | 152973854 | Bcer98_R0056 | - | 5S ribosomal RNA |
| 261525 | 261601 | + | 77 | 152973854 | Bcer98_R0057 | - | 16 Met tRNA |
| 261605 | 261680 | + | 76 | 152973854 | Bcer98_R0058 | - | 06 Asp tRNA |
| 277345 | 278888 | + | 1544 | 152973854 | Bcer98_R0059 | - | 16S ribosomal RNA |
| 279156 | 282063 | + | 2908 | 152973854 | Bcer98_R0060 | - | 23S ribosomal RNA |
| 282161 | 282275 | + | 115 | 152973854 | Bcer98_R0061 | - | 5S ribosomal RNA |
| 285014 | 286557 | + | 1544 | 152973854 | Bcer98_R0062 | - | 16S ribosomal RNA |
| 286819 | 289726 | + | 2908 | 152973854 | Bcer98_R0063 | - | 23S ribosomal RNA |
| 289824 | 289938 | + | 115 | 152973854 | Bcer98_R0064 | - | 5S ribosomal RNA |
| 295269 | 296812 | + | 1544 | 152973854 | Bcer98_R0065 | - | 16S ribosomal RNA |
| 297075 | 299981 | + | 2907 | 152973854 | Bcer98_R0066 | - | 23S ribosomal RNA |
| 300078 | 300192 | + | 115 | 152973854 | Bcer98_R0067 | - | 5S ribosomal RNA |
| 302785 | 304328 | + | 1544 | 152973854 | Bcer98_R0068 | - | 16S ribosomal RNA |
| 304590 | 307497 | + | 2908 | 152973854 | Bcer98_R0069 | - | 23S ribosomal RNA |
| 307595 | 307709 | + | 115 | 152973854 | Bcer98_R0070 | - | 5S ribosomal RNA |
| 515522 | 517065 | + | 1544 | 152973854 | Bcer98_R0071 | - | 16S ribosomal RNA |
| 517327 | 520233 | + | 2907 | 152973854 | Bcer98_R0072 | - | 23S ribosomal RNA |
| 520387 | 520501 | + | 115 | 152973854 | Bcer98_R0073 | - | 5S ribosomal RNA |
| 520509 | 520583 | + | 75 | 152973854 | Bcer98_R0074 | - | 07 Asn tRNA |
| 520589 | 520680 | + | 92 | 152973854 | Bcer98_R0075 | - | 08 Ser tRNA |
| 520693 | 520767 | + | 75 | 152973854 | Bcer98_R0076 | - | 04 Glu tRNA |
| 520773 | 520848 | + | 76 | 152973854 | Bcer98_R0077 | - | 13 Val tRNA |
| 520872 | 520948 | + | 77 | 152973854 | Bcer98_R0078 | - | 16 Met tRNA |
| 520952 | 521027 | + | 76 | 152973854 | Bcer98_R0079 | - | 06 Asp tRNA |
| 521036 | 521111 | + | 76 | 152973854 | Bcer98_R0080 | - | 17 Phe tRNA |
| 521126 | 521201 | + | 76 | 152973854 | Bcer98_R0081 | - | 12 Thr tRNA |
| 521211 | 521294 | + | 84 | 152973854 | Bcer98_R0082 | - | 18 Tyr tRNA |
| 521302 | 521375 | + | 74 | 152973854 | Bcer98_R0083 | - | 20 Trp tRNA |
| 521386 | 521461 | + | 76 | 152973854 | Bcer98_R0084 | - | 09 His tRNA |
| 521575 | 521649 | + | 75 | 152973854 | Bcer98_R0085 | - | 05 Gln tRNA |
| 521654 | 521728 | + | 75 | 152973854 | Bcer98_R0086 | - | 01 Gly tRNA |
| 521739 | 521809 | + | 71 | 152973854 | Bcer98_R0087 | - | 19 Cys tRNA |
| 521821 | 521902 | + | 82 | 152973854 | Bcer98_R0088 | - | 15 Leu tRNA |
| 529172 | 529245 | + | 74 | 152973854 | Bcer98_R0089 | - | 01 Gly tRNA |
| 691784 | 693327 | + | 1544 | 152973854 | Bcer98_R0090 | - | 16S ribosomal RNA |
| 693589 | 696495 | + | 2907 | 152973854 | Bcer98_R0091 | - | 23S ribosomal RNA |
| 696722 | 696836 | + | 115 | 152973854 | Bcer98_R0092 | - | 5S ribosomal RNA |
| 696840 | 696915 | + | 76 | 152973854 | Bcer98_R0093 | - | 13 Val tRNA |
| 696925 | 697008 | + | 84 | 152973854 | Bcer98_R0094 | - | 18 Tyr tRNA |
| 697019 | 697093 | + | 75 | 152973854 | Bcer98_R0095 | - | 05 Gln tRNA |
| 697099 | 697174 | + | 76 | 152973854 | Bcer98_R0096 | - | 10 Lys tRNA |
| 697188 | 697268 | + | 81 | 152973854 | Bcer98_R0097 | - | 15 Leu tRNA |
| 697298 | 697372 | + | 75 | 152973854 | Bcer98_R0098 | - | 01 Gly tRNA |
| 697383 | 697471 | + | 89 | 152973854 | Bcer98_R0099 | - | 15 Leu tRNA |
| 697475 | 697551 | + | 77 | 152973854 | Bcer98_R0100 | - | 11 Arg tRNA |
| 697556 | 697629 | + | 74 | 152973854 | Bcer98_R0101 | - | 03 Pro tRNA |
| 697640 | 697712 | + | 73 | 152973854 | Bcer98_R0102 | - | 02 Ala tRNA |
| 697727 | 697819 | + | 93 | 152973854 | Bcer98_R0103 | - | 08 Ser tRNA |
| 697879 | 697968 | + | 90 | 152973854 | Bcer98_R0104 | - | 08 Ser tRNA |
| 697988 | 698064 | + | 77 | 152973854 | Bcer98_R0105 | - | 16 Met tRNA |
| 698068 | 698143 | + | 76 | 152973854 | Bcer98_R0106 | - | 06 Asp tRNA |
| 698152 | 698227 | + | 76 | 152973854 | Bcer98_R0107 | - | 17 Phe tRNA |
| 698242 | 698314 | + | 73 | 152973854 | Bcer98_R0108 | - | 12 Thr tRNA |
| 698321 | 698391 | + | 71 | 152973854 | Bcer98_R0109 | - | 20 Trp tRNA |
| 698403 | 698479 | + | 77 | 152973854 | Bcer98_R0110 | - | 14 Ile tRNA |
| 698486 | 698560 | + | 75 | 152973854 | Bcer98_R0111 | - | 07 Asn tRNA |
| 698562 | 698633 | + | 72 | 152973854 | Bcer98_R0112 | - | 04 Glu tRNA |
| 1112860 | 1112932 | - | 73 | 152973854 | Bcer98_R0113 | - | 13 Val tRNA |
| 1387173 | 1387525 | + | 353 | 152973854 | Bcer98_R0114 | - | RNA component of RNaseP |
| 3053375 | 3053448 | - | 74 | 152973854 | Bcer98_R0115 | - | 16 Met tRNA |
| 3270012 | 3270088 | - | 77 | 152973854 | Bcer98_R0116 | - | 11 Arg tRNA |
| 3270090 | 3270163 | - | 74 | 152973854 | Bcer98_R0117 | - | 01 Gly tRNA |
| 3569879 | 3569950 | - | 72 | 152973854 | Bcer98_R0118 | - | 04 Glu tRNA |
| 3569958 | 3570048 | - | 91 | 152973854 | Bcer98_R0119 | - | 08 Ser tRNA |
| 3570053 | 3570127 | - | 75 | 152973854 | Bcer98_R0120 | - | 07 Asn tRNA |
| 3570132 | 3570208 | - | 77 | 152973854 | Bcer98_R0121 | - | 14 Ile tRNA |
| 3570220 | 3570290 | - | 71 | 152973854 | Bcer98_R0122 | - | 01 Gly tRNA |
| 3570304 | 3570379 | - | 76 | 152973854 | Bcer98_R0123 | - | 10 Lys tRNA |
| 3570390 | 3570465 | - | 76 | 152973854 | Bcer98_R0124 | - | 12 Thr tRNA |
| 3570480 | 3570555 | - | 76 | 152973854 | Bcer98_R0125 | - | 17 Phe tRNA |
| 3570565 | 3570640 | - | 76 | 152973854 | Bcer98_R0126 | - | 06 Asp tRNA |
| 3570642 | 3570718 | - | 77 | 152973854 | Bcer98_R0127 | - | 16 Met tRNA |
| 3570738 | 3570830 | - | 93 | 152973854 | Bcer98_R0128 | - | 08 Ser tRNA |
| 3570848 | 3570924 | - | 77 | 152973854 | Bcer98_R0129 | - | 16 Met tRNA |
| 3570929 | 3571005 | - | 77 | 152973854 | Bcer98_R0130 | - | 16 Met tRNA |
| 3571023 | 3571095 | - | 73 | 152973854 | Bcer98_R0131 | - | 02 Ala tRNA |
| 3571110 | 3571183 | - | 74 | 152973854 | Bcer98_R0132 | - | 03 Pro tRNA |
| 3571192 | 3571265 | - | 74 | 152973854 | Bcer98_R0133 | - | 11 Arg tRNA |
| 3571269 | 3571357 | - | 89 | 152973854 | Bcer98_R0134 | - | 15 Leu tRNA |
| 3571368 | 3571442 | - | 75 | 152973854 | Bcer98_R0135 | - | 01 Gly tRNA |
| 3571472 | 3571552 | - | 81 | 152973854 | Bcer98_R0136 | - | 15 Leu tRNA |
| 3571571 | 3571646 | - | 76 | 152973854 | Bcer98_R0137 | - | 09 His tRNA |
| 3571656 | 3571731 | - | 76 | 152973854 | Bcer98_R0138 | - | 12 Thr tRNA |
| 3571737 | 3571812 | - | 76 | 152973854 | Bcer98_R0139 | - | 13 Val tRNA |
| 3571816 | 3571930 | - | 115 | 152973854 | Bcer98_R0140 | - | 5S ribosomal RNA |
| 3572079 | 3574985 | - | 2907 | 152973854 | Bcer98_R0141 | - | 23S ribosomal RNA |
| 3575247 | 3576790 | - | 1544 | 152973854 | Bcer98_R0142 | - | 16S ribosomal RNA |
| 3731017 | 3731374 | - | 358 | 152973854 | Bcer98_R0143 | - | tmRNA |
| 3746250 | 3746328 | - | 79 | 152973854 | Bcer98_R0144 | - | 11 Arg tRNA |
| 4065917 | 4065989 | - | 73 | 152973854 | Bcer98_R0145 | - | 17 Phe tRNA |
| 4066032 | 4066107 | - | 76 | 152973854 | Bcer98_R0146 | - | 06 Asp tRNA |
| 4066120 | 4066191 | - | 72 | 152973854 | Bcer98_R0147 | - | 04 Glu tRNA |
| 4066205 | 4066280 | - | 76 | 152973854 | Bcer98_R0148 | - | 10 Lys tRNA |