ФЭНДОМ


   LOCUS       NC_009784            2204018 bp    DNA     circular BCT 07-SEP-2007
   DEFINITION  Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence.
   ACCESSION   NC_009784
   VERSION     NC_009784.1  GI:156975952
   KEYWORDS    .
   SOURCE      Vibrio harveyi ATCC BAA-1116
     ORGANISM  Vibrio harveyi ATCC BAA-1116
               Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales;
               Vibrionaceae; Vibrio.
   REFERENCE   1  (bases 1 to 2204018)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (06-SEP-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   2  (bases 1 to 2204018)
     AUTHORS   Bassler,B., Clifton,S.W., Fulton,L., Delehaunty,K., Fronick,C.,
               Harrison,M., Markivic,C., Fulton,R., Tin-Wollam,A.-M., Shah,N.,
               Pepin,K., Nash,W., Thiruvilangam,P., Bhonagiri,V., Waters,C.,
               Tu,K.C., Irgon,J. and Wilson,R.K.
     CONSRTM   The Vibrio harveyi Genome Sequencing Project
     TITLE     Direct Submission
     JOURNAL   Submitted (16-AUG-2007) Genetics, Genome Sequencing Center, 4444
               Forest Park Parkway, St. Louis, MO 63108, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000790.
               Vibrio harveyi belongs to the group of bioluminescent bacteria that
               'glow in the dark,' just as the commonly known firefly. Based on
               their 16S  ribosomal RNA (rRNA) classification, they belong to the
               group of bacteria known as Proteobacteria, which is further
               sub-divided into five groups, including the gamma proteobacteria.
               This group includes many families, one of which is the Vibrionaceae
               (bioluminescent bacteria). One of the Vibrios is a human pathogen
               and causes cholera. Vibrio harveyi can be found globally in marine
               environments, either in a free-living state or in symbiosis with
               marine life.  The sequenced strain is BB120, ATCC BAA-1116
               http://www.atcc.org/common/catalog/numSearch/numResults.cfm
               Sequence/Assembly
               The genome of Vibrio harveyi was sequenced to 8X coverage using a
               combination of plasmid and fosmid end sequences. Additional 454
               sequence reads bring the present coverage to 10.8X. Assembly was
               performed using the PCAP software (Genome Res. 13(9):2164-70 2003).
                The genome has  undergone automated sequence improvement
               (pre-finishing) followed by  manual finishing, and automated
               annotation. The National Science  Foundation (NSF) is providing
               funding for the complete sequence of the  Vibrio harveyi genome.
               
               Annotation
               Coding sequences were predicted using GeneMark v3.3 and Glimmer2
               v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were
               blasted against NCBI's non-redundant (NR) database and predictions
               generated based on protein alignments. RNA genes were determined
               using tRNAscan-SE 1.23 or Rfam v8.0. Gene names are generated at
               the contig level and may not necessarily reflect any known order or
               orientation between contigs.For questions regarding this assembly
               or project, please visit the Vibrio harveyi genome page
               (http://genome.wustl.edu/genome.cgi?GENOME=Vibrio%20harveyi) and
               choose the designated contact person.
               COMPLETENESS: full length.


Расположение РНК Править

Начало Конец Направление Длина PID Ген COG Комментарий
111193 111301 + 109 156975952 VIBHAR_04846 - Qrr RNA
555291 555399 - 109 156975952 VIBHAR_05322 - Qrr RNA
674548 674635 - 88 156975952 VIBHAR_05459 - 08</sub> Ser tRNA
882885 882955 + 71 156975952 VIBHAR_05672 - 19</sub> Cys tRNA
886895 886978 + 84 156975952 VIBHAR_05676 - 15</sub> Leu tRNA
887079 887151 + 73 156975952 VIBHAR_05677 - 01</sub> Gly tRNA
887160 887230 + 71 156975952 VIBHAR_05678 - 19</sub> Cys tRNA
890715 890798 + 84 156975952 VIBHAR_05682 - 15</sub> Leu tRNA
890855 890925 + 71 156975952 VIBHAR_05683 - 19</sub> Cys tRNA
891110 891180 + 71 156975952 VIBHAR_05684 - 19</sub> Cys tRNA
1080963 1081069 - 107 156975952 VIBHAR_05886 - Qrr RNA
1336060 1336131 + 72 156975952 VIBHAR_06159 - 01</sub> Gly tRNA
1833376 1833484 - 109 156975952 VIBHAR_06697 - Qrr RNA
1842706 1842786 + 81 156975952 VIBHAR_06707 - 15</sub> Leu tRNA
1864333 1864645 + 313 156975952 VIBHAR_06731 - CsrB/RsmB RNA family
1921624 1921695 + 72 156975952 VIBHAR_06802 - 01</sub> Gly tRNA
1939217 1939304 - 88 156975952 VIBHAR_06826 - 08</sub> Ser tRNA
1939395 1939511 - 117 156975952 VIBHAR_06827 - 5S ribosomal RNA
1939607 1942491 + 2885 156975952 VIBHAR_07134 - 23S ribosomal RNA
1942813 1942885 - 73 156975952 VIBHAR_06828 - 13</sub> Val tRNA
1942924 1942996 - 73 156975952 VIBHAR_06829 - 02</sub> Ala tRNA
1943024 1943096 - 73 156975952 VIBHAR_06830 - 10</sub> Lys tRNA
1943102 1943174 - 73 156975952 VIBHAR_06831 - 04</sub> Glu tRNA
1944284 1944825 - 542 156975952 VIBHAR_06832 - small subunit ribosomal RNA