LOCUS NC_009840 1738790 bp DNA circular BCT 21-SEP-2007
DEFINITION Prochlorococcus marinus str. MIT 9215, complete genome.
ACCESSION NC_009840
VERSION NC_009840.1 GI:157412338
KEYWORDS .
SOURCE Prochlorococcus marinus str. MIT 9215
ORGANISM Prochlorococcus marinus str. MIT 9215
Bacteria; Cyanobacteria; Prochlorales; Prochlorococcaceae;
Prochlorococcus.
REFERENCE 1 (bases 1 to 1738790)
AUTHORS Kettler,G., Martiny,A.C., Huang,K., Zucker,J., Coleman,M.L.,
Rodrigue,S., Chen,F., Lapidus,A., Ferriera,S., Johnson,J.,
Steglich,C., Church,G., Richardson,P. and Chisholm,S.W.
CONSRTM US DOE Joint Genome Institute
TITLE Patterns and Implications of Gene Gain and Loss in the Evolution of
Prochlorococcus
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1738790)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (21-SEP-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1738790)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
Dalin,E., Tice,H., Pitluck,S., Goltsman,E., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Kim,E., Chisholm,S.W. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (07-SEP-2007) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000825.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4001067
Source DNA and bacteria available from Sallie W. Chisholm
(chisholm@mit.edu)
Contacts: Sallie W. Chisholm (chisholm@mit.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-PGF
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК[]
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 63665 | 63915 | - | 251 | 157412338 | P9215_tmRNAVIMSS3212878 | - | tmRNA, 10Sa RNA, SsrA |
| 72797 | 72878 | - | 82 | 157412338 | P9215_tRNALeuVIMSS1723373 | - | 15 Leu tRNA |
| 130026 | 130097 | + | 72 | 157412338 | P9215_tRNAAsnVIMSS1723390 | - | 07 Asn tRNA |
| 236411 | 236492 | + | 82 | 157412338 | P9215_tRNALeuVIMSS1723391 | - | 15 Leu tRNA |
| 256261 | 256334 | - | 74 | 157412338 | P9215_tRNAArgVIMSS1723372 | - | 11 Arg tRNA |
| 271390 | 271462 | - | 73 | 157412338 | P9215_tRNAMetVIMSS1723371 | - | 16 Met tRNA |
| 303246 | 303321 | - | 76 | 157412338 | P9215_tRNAPheVIMSS1723370 | - | 17 Phe tRNA |
| 319913 | 321377 | + | 1465 | 157412338 | P9215_rrsVIMSS1723409 | - | 16S ribosomal RNA |
| 321502 | 321575 | + | 74 | 157412338 | P9215_tRNAIleVIMSS1723392 | - | 14 Ile tRNA |
| 321588 | 321660 | + | 73 | 157412338 | P9215_tRNAAlaVIMSS1723393 | - | 02 Ala tRNA |
| 321917 | 324790 | + | 2874 | 157412338 | P9215_rrlVIMSS1723408 | - | 23S ribosomal RNA |
| 324857 | 324972 | + | 116 | 157412338 | P9215_rrfVIMSS1723410 | - | 5S ribosomal RNA |
| 370617 | 370688 | - | 72 | 157412338 | P9215_tRNAThrVIMSS1723368 | - | 12 Thr tRNA |
| 375406 | 375476 | - | 71 | 157412338 | P9215_tRNAThrVIMSS1723367 | - | 12 Thr tRNA |
| 407094 | 407165 | - | 72 | 157412338 | P9215_tRNAThrVIMSS1723366 | - | 12 Thr tRNA |
| 407176 | 407257 | - | 82 | 157412338 | P9215_tRNATyrVIMSS1723365 | - | 18 Tyr tRNA |
| 487224 | 487297 | - | 74 | 157412338 | P9215_tRNAAspVIMSS1723364 | - | 06 Asp tRNA |
| 487678 | 487750 | - | 73 | 157412338 | P9215_tRNATrpVIMSS1723363 | - | 20 Trp tRNA |
| 575553 | 575638 | + | 86 | 157412338 | P9215_tRNALeuVIMSS1723394 | - | 15 Leu tRNA |
| 661866 | 661952 | - | 87 | 157412338 | P9215_tRNASerVIMSS1723362 | - | 08 Ser tRNA |
| 808659 | 808732 | - | 74 | 157412338 | P9215_tRNAProVIMSS1723361 | - | 03 Pro tRNA |
| 861629 | 861715 | + | 87 | 157412338 | P9215_tRNASerVIMSS1723395 | - | 08 Ser tRNA |
| 902395 | 902468 | + | 74 | 157412338 | P9215_tRNAMetVIMSS1723396 | - | 16 Met tRNA |
| 1029617 | 1029689 | - | 73 | 157412338 | P9215_tRNAGluVIMSS1723360 | - | 04 Glu tRNA |
| 1073305 | 1073376 | + | 72 | 157412338 | P9215_tRNALysVIMSS1723397 | - | 10 Lys tRNA |
| 1169648 | 1169732 | - | 85 | 157412338 | P9215_tRNASerVIMSS1723381 | - | 08 Ser tRNA |
| 1199257 | 1199330 | + | 74 | 157412338 | P9215_tRNAArgVIMSS1723382 | - | 11 Arg tRNA |
| 1270351 | 1270433 | - | 83 | 157412338 | P9215_pseudotRNAVIMSS1723380 | - | Xaa tRNA |
| 1283535 | 1283607 | - | 73 | 157412338 | P9215_tRNAAlaVIMSS1723379 | - | 02 Ala tRNA |
| 1323936 | 1324017 | + | 82 | 157412338 | P9215_tRNALeuVIMSS1723383 | - | 15 Leu tRNA |
| 1329195 | 1329267 | + | 73 | 157412338 | P9215_tRNAHisVIMSS1723384 | - | 09 His tRNA |
| 1334273 | 1334353 | - | 81 | 157412338 | P9215_ffsVIMSS1723412 | - | ffs 4.5S RNA component of the signal recognition particle (SRP) |
| 1345545 | 1345615 | - | 71 | 157412338 | P9215_tRNAGlyVIMSS1723378 | - | 01 Gly tRNA |
| 1377317 | 1377388 | + | 72 | 157412338 | P9215_tRNAValVIMSS1723385 | - | 13 Val tRNA |
| 1513533 | 1513604 | + | 72 | 157412338 | P9215_tRNAThrVIMSS1723386 | - | 12 Thr tRNA |
| 1550976 | 1551064 | - | 89 | 157412338 | P9215_tRNASerVIMSS1723377 | - | 08 Ser tRNA |
| 1570878 | 1570949 | + | 72 | 157412338 | P9215_tRNAGlnVIMSS1723387 | - | 05 Gln tRNA |
| 1583582 | 1583655 | + | 74 | 157412338 | P9215_tRNAArgVIMSS1723388 | - | 11 Arg tRNA |
| 1598229 | 1598299 | + | 71 | 157412338 | P9215_tRNACysVIMSS1723389 | - | 19 Cys tRNA |
| 1615207 | 1615280 | - | 74 | 157412338 | P9215_tRNAArgVIMSS1723376 | - | 11 Arg tRNA |
| 1615376 | 1615682 | + | 307 | 157412338 | P9215_rnpBVIMSS1723411 | - | rnpB RnpB RNA: catalytic subunit of RNase P |
| 1698190 | 1698261 | - | 72 | 157412338 | P9215_tRNAValVIMSS1723374 | - | 13 Val tRNA |